Hb_120155_010

Information

Type -
Description -
Location Contig120155: 3447-3848
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_120155_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_055384_010 0.1911613463 - - -
3 Hb_000125_120 0.2115675342 transcription factor TF Family: mTERF -
4 Hb_001277_220 0.2160533461 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
5 Hb_000059_040 0.2171825455 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
6 Hb_000200_140 0.2237800656 - - PREDICTED: uncharacterized protein LOC104591989 [Nelumbo nucifera]
7 Hb_000548_050 0.2270149571 - - hypothetical protein POPTR_0008s12570g [Populus trichocarpa]
8 Hb_001049_030 0.2291426492 - - catalytic, putative [Ricinus communis]
9 Hb_000890_040 0.2314756161 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
10 Hb_052764_050 0.2334924272 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
11 Hb_063100_010 0.233709804 - - TATA box-binding protein-associated factor [Populus trichocarpa]
12 Hb_000196_070 0.236077613 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH80-like [Jatropha curcas]
13 Hb_004109_040 0.2373645066 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
14 Hb_000175_450 0.2375104739 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
15 Hb_023827_040 0.2381497426 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
16 Hb_112356_040 0.2387207787 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
17 Hb_006346_040 0.2399757498 - - hypothetical protein JCGZ_20335 [Jatropha curcas]
18 Hb_003073_210 0.2402724182 - - hypothetical protein CISIN_1g036722mg, partial [Citrus sinensis]
19 Hb_010315_050 0.2411451267 - - hypothetical protein JCGZ_25247 [Jatropha curcas]
20 Hb_000173_400 0.2419605008 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]

Gene co-expression network

sample Hb_120155_010 Hb_120155_010 Hb_055384_010 Hb_055384_010 Hb_120155_010--Hb_055384_010 Hb_000125_120 Hb_000125_120 Hb_120155_010--Hb_000125_120 Hb_001277_220 Hb_001277_220 Hb_120155_010--Hb_001277_220 Hb_000059_040 Hb_000059_040 Hb_120155_010--Hb_000059_040 Hb_000200_140 Hb_000200_140 Hb_120155_010--Hb_000200_140 Hb_000548_050 Hb_000548_050 Hb_120155_010--Hb_000548_050 Hb_112399_010 Hb_112399_010 Hb_055384_010--Hb_112399_010 Hb_002435_110 Hb_002435_110 Hb_055384_010--Hb_002435_110 Hb_008103_120 Hb_008103_120 Hb_055384_010--Hb_008103_120 Hb_002025_310 Hb_002025_310 Hb_055384_010--Hb_002025_310 Hb_003073_210 Hb_003073_210 Hb_055384_010--Hb_003073_210 Hb_012670_140 Hb_012670_140 Hb_000125_120--Hb_012670_140 Hb_063100_010 Hb_063100_010 Hb_000125_120--Hb_063100_010 Hb_000244_300 Hb_000244_300 Hb_000125_120--Hb_000244_300 Hb_012799_110 Hb_012799_110 Hb_000125_120--Hb_012799_110 Hb_001720_010 Hb_001720_010 Hb_000125_120--Hb_001720_010 Hb_054865_090 Hb_054865_090 Hb_000125_120--Hb_054865_090 Hb_010315_050 Hb_010315_050 Hb_001277_220--Hb_010315_050 Hb_000009_580 Hb_000009_580 Hb_001277_220--Hb_000009_580 Hb_002073_040 Hb_002073_040 Hb_001277_220--Hb_002073_040 Hb_001277_220--Hb_000059_040 Hb_001318_030 Hb_001318_030 Hb_001277_220--Hb_001318_030 Hb_026698_010 Hb_026698_010 Hb_001277_220--Hb_026698_010 Hb_002505_040 Hb_002505_040 Hb_000059_040--Hb_002505_040 Hb_000059_040--Hb_002073_040 Hb_000009_590 Hb_000009_590 Hb_000059_040--Hb_000009_590 Hb_004586_190 Hb_004586_190 Hb_000059_040--Hb_004586_190 Hb_000059_040--Hb_010315_050 Hb_006588_090 Hb_006588_090 Hb_000059_040--Hb_006588_090 Hb_000532_020 Hb_000532_020 Hb_000200_140--Hb_000532_020 Hb_002890_030 Hb_002890_030 Hb_000200_140--Hb_002890_030 Hb_004204_080 Hb_004204_080 Hb_000200_140--Hb_004204_080 Hb_002341_030 Hb_002341_030 Hb_000200_140--Hb_002341_030 Hb_005839_120 Hb_005839_120 Hb_000200_140--Hb_005839_120 Hb_008643_060 Hb_008643_060 Hb_000200_140--Hb_008643_060 Hb_012114_060 Hb_012114_060 Hb_000548_050--Hb_012114_060 Hb_005565_040 Hb_005565_040 Hb_000548_050--Hb_005565_040 Hb_052764_050 Hb_052764_050 Hb_000548_050--Hb_052764_050 Hb_000548_050--Hb_012799_110 Hb_011942_080 Hb_011942_080 Hb_000548_050--Hb_011942_080 Hb_000394_190 Hb_000394_190 Hb_000548_050--Hb_000394_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.49977 0.703821 0.422544 0 0.252968 1.02041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.394763 0.310075 0.497035 0.132734 0

CAGE analysis