Hb_002518_060

Information

Type -
Description -
Location Contig2518: 82464-86506
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04470g
description POPTRDRAFT_203513; hypothetical protein
nr
ID XP_012068519.1
description PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A9PE12
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04470g PE=2 SV=1
Gene Ontology
ID GO:0005739
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26270: 82532-86207 , PASA_asmbl_26272: 83927-84131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_060 0.0 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
2 Hb_002681_030 0.2685478287 - - PREDICTED: fatty-acid-binding protein 1-like [Jatropha curcas]
3 Hb_000215_370 0.2946180703 - - myoinositol oxygenase, putative [Ricinus communis]
4 Hb_000421_180 0.2992366037 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000708_040 0.2993409752 - - conserved hypothetical protein [Ricinus communis]
6 Hb_085226_010 0.302282684 - - hypothetical protein POPTR_0002s03930g [Populus trichocarpa]
7 Hb_000684_240 0.3023318627 - - hypothetical protein RCOM_0819620 [Ricinus communis]
8 Hb_006787_050 0.3051115404 - - hypothetical protein JCGZ_23988 [Jatropha curcas]
9 Hb_001300_210 0.3091037619 transcription factor TF Family: ARF PREDICTED: auxin response factor 23-like [Jatropha curcas]
10 Hb_056196_040 0.3163615421 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000032_440 0.3182243163 - - protein with unknown function [Ricinus communis]
12 Hb_011380_020 0.3205333425 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X4 [Populus euphratica]
13 Hb_010174_080 0.3205539927 - - -
14 Hb_000326_040 0.3251427742 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
15 Hb_004225_030 0.3255514555 - - hypothetical protein F383_15788 [Gossypium arboreum]
16 Hb_002234_060 0.3264435714 - - F-box protein, atfbl3, putative [Ricinus communis]
17 Hb_004545_020 0.3278634595 - - PREDICTED: transmembrane protein adipocyte-associated 1-like [Populus euphratica]
18 Hb_000317_490 0.3280247676 - - Gibberellin receptor GID1, putative [Ricinus communis]
19 Hb_006921_040 0.3281743756 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
20 Hb_000331_460 0.3289277929 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002518_060 Hb_002518_060 Hb_002681_030 Hb_002681_030 Hb_002518_060--Hb_002681_030 Hb_000215_370 Hb_000215_370 Hb_002518_060--Hb_000215_370 Hb_000421_180 Hb_000421_180 Hb_002518_060--Hb_000421_180 Hb_000708_040 Hb_000708_040 Hb_002518_060--Hb_000708_040 Hb_085226_010 Hb_085226_010 Hb_002518_060--Hb_085226_010 Hb_000684_240 Hb_000684_240 Hb_002518_060--Hb_000684_240 Hb_001300_210 Hb_001300_210 Hb_002681_030--Hb_001300_210 Hb_002681_030--Hb_000684_240 Hb_004228_080 Hb_004228_080 Hb_002681_030--Hb_004228_080 Hb_032208_020 Hb_032208_020 Hb_002681_030--Hb_032208_020 Hb_000326_040 Hb_000326_040 Hb_002681_030--Hb_000326_040 Hb_007432_030 Hb_007432_030 Hb_002681_030--Hb_007432_030 Hb_001946_350 Hb_001946_350 Hb_000215_370--Hb_001946_350 Hb_002722_010 Hb_002722_010 Hb_000215_370--Hb_002722_010 Hb_000544_160 Hb_000544_160 Hb_000215_370--Hb_000544_160 Hb_079751_010 Hb_079751_010 Hb_000215_370--Hb_079751_010 Hb_000025_170 Hb_000025_170 Hb_000215_370--Hb_000025_170 Hb_001960_040 Hb_001960_040 Hb_000421_180--Hb_001960_040 Hb_001357_140 Hb_001357_140 Hb_000421_180--Hb_001357_140 Hb_114893_020 Hb_114893_020 Hb_000421_180--Hb_114893_020 Hb_001357_180 Hb_001357_180 Hb_000421_180--Hb_001357_180 Hb_002188_130 Hb_002188_130 Hb_000421_180--Hb_002188_130 Hb_000317_490 Hb_000317_490 Hb_000421_180--Hb_000317_490 Hb_000032_440 Hb_000032_440 Hb_000708_040--Hb_000032_440 Hb_002284_310 Hb_002284_310 Hb_000708_040--Hb_002284_310 Hb_000708_040--Hb_000317_490 Hb_003688_050 Hb_003688_050 Hb_000708_040--Hb_003688_050 Hb_002234_060 Hb_002234_060 Hb_000708_040--Hb_002234_060 Hb_000331_460 Hb_000331_460 Hb_000708_040--Hb_000331_460 Hb_000138_190 Hb_000138_190 Hb_085226_010--Hb_000138_190 Hb_002471_200 Hb_002471_200 Hb_085226_010--Hb_002471_200 Hb_007765_060 Hb_007765_060 Hb_085226_010--Hb_007765_060 Hb_057183_040 Hb_057183_040 Hb_085226_010--Hb_057183_040 Hb_100414_010 Hb_100414_010 Hb_085226_010--Hb_100414_010 Hb_007741_170 Hb_007741_170 Hb_085226_010--Hb_007741_170 Hb_006787_050 Hb_006787_050 Hb_000684_240--Hb_006787_050 Hb_000684_240--Hb_000326_040 Hb_000926_020 Hb_000926_020 Hb_000684_240--Hb_000926_020 Hb_005211_160 Hb_005211_160 Hb_000684_240--Hb_005211_160 Hb_000684_240--Hb_000421_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54174 0.185812 4.07027 1.15658 0.376668 0.0712287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71383 0.518483 3.65216 0.083187 0.356292

CAGE analysis