Hb_001190_090

Information

Type -
Description -
Location Contig1190: 100033-100731
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa020989mg
description hypothetical protein
nr
ID XP_012078066.1
description PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID M5WNU9
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020989mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001190_090 0.0 - - PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
2 Hb_002118_040 0.1994944639 - - PREDICTED: uncharacterized protein LOC104727990 [Camelina sativa]
3 Hb_004757_030 0.2392951549 - - -
4 Hb_005078_030 0.2393424492 - - -
5 Hb_002357_050 0.2430901401 - - -
6 Hb_006938_070 0.2467154228 - - PREDICTED: uncharacterized protein LOC104893877 [Beta vulgaris subsp. vulgaris]
7 Hb_001318_090 0.2488079329 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
8 Hb_012725_080 0.2491922169 - - -
9 Hb_001930_020 0.2507904923 - - PREDICTED: pectinesterase QRT1 [Jatropha curcas]
10 Hb_005357_090 0.252145354 - - ubiquitin, putative [Ricinus communis]
11 Hb_005396_160 0.2575400014 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
12 Hb_124518_010 0.2619999567 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
13 Hb_000735_150 0.2796882483 - - hypothetical protein JCGZ_15322 [Jatropha curcas]
14 Hb_052983_010 0.299070289 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_042211_010 0.2997191637 - - PREDICTED: uncharacterized protein LOC103404019 [Malus domestica]
16 Hb_103604_010 0.3126527315 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
17 Hb_006586_010 0.3234369636 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_165666_010 0.3336857655 - - -
19 Hb_004108_030 0.3549038749 - - -
20 Hb_000453_220 0.3549607183 - - hypothetical protein JCGZ_11079 [Jatropha curcas]

Gene co-expression network

sample Hb_001190_090 Hb_001190_090 Hb_002118_040 Hb_002118_040 Hb_001190_090--Hb_002118_040 Hb_004757_030 Hb_004757_030 Hb_001190_090--Hb_004757_030 Hb_005078_030 Hb_005078_030 Hb_001190_090--Hb_005078_030 Hb_002357_050 Hb_002357_050 Hb_001190_090--Hb_002357_050 Hb_006938_070 Hb_006938_070 Hb_001190_090--Hb_006938_070 Hb_001318_090 Hb_001318_090 Hb_001190_090--Hb_001318_090 Hb_000042_190 Hb_000042_190 Hb_002118_040--Hb_000042_190 Hb_000733_130 Hb_000733_130 Hb_002118_040--Hb_000733_130 Hb_103604_010 Hb_103604_010 Hb_002118_040--Hb_103604_010 Hb_006586_010 Hb_006586_010 Hb_002118_040--Hb_006586_010 Hb_052983_010 Hb_052983_010 Hb_002118_040--Hb_052983_010 Hb_004757_030--Hb_005078_030 Hb_004757_030--Hb_002357_050 Hb_001930_020 Hb_001930_020 Hb_004757_030--Hb_001930_020 Hb_005357_090 Hb_005357_090 Hb_004757_030--Hb_005357_090 Hb_004757_030--Hb_001318_090 Hb_012725_080 Hb_012725_080 Hb_004757_030--Hb_012725_080 Hb_005078_030--Hb_002357_050 Hb_005078_030--Hb_001930_020 Hb_005078_030--Hb_005357_090 Hb_005078_030--Hb_001318_090 Hb_005078_030--Hb_012725_080 Hb_002357_050--Hb_001930_020 Hb_002357_050--Hb_005357_090 Hb_124518_010 Hb_124518_010 Hb_002357_050--Hb_124518_010 Hb_000735_150 Hb_000735_150 Hb_002357_050--Hb_000735_150 Hb_006938_070--Hb_000735_150 Hb_006938_070--Hb_124518_010 Hb_006938_070--Hb_002118_040 Hb_006938_070--Hb_005357_090 Hb_019654_080 Hb_019654_080 Hb_006938_070--Hb_019654_080 Hb_001318_090--Hb_012725_080 Hb_005396_160 Hb_005396_160 Hb_001318_090--Hb_005396_160 Hb_001318_090--Hb_002357_050 Hb_042211_010 Hb_042211_010 Hb_001318_090--Hb_042211_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175512 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0637292 0.341089 0 0

CAGE analysis