Hb_000042_190

Information

Type -
Description -
Location Contig42: 169675-172658
Sequence    

Annotation

kegg
ID rcu:RCOM_0380540
description hypothetical protein
nr
ID XP_002533708.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T639
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0380540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_052983_010 0.2731501888 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_001930_020 0.2785304444 - - PREDICTED: pectinesterase QRT1 [Jatropha curcas]
4 Hb_002357_050 0.2787660903 - - -
5 Hb_005357_090 0.2787799399 - - ubiquitin, putative [Ricinus communis]
6 Hb_124518_010 0.2818161257 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
7 Hb_005078_030 0.2830649982 - - -
8 Hb_004757_030 0.2833292393 - - -
9 Hb_000735_150 0.2902678955 - - hypothetical protein JCGZ_15322 [Jatropha curcas]
10 Hb_062244_010 0.3055063476 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_001318_090 0.3064240049 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
12 Hb_012725_080 0.3069975308 - - -
13 Hb_012363_010 0.3164367836 - - -
14 Hb_135624_010 0.3169891486 - - PREDICTED: inositol transporter 4-like [Jatropha curcas]
15 Hb_005396_160 0.3184647749 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
16 Hb_002118_040 0.3213221213 - - PREDICTED: uncharacterized protein LOC104727990 [Camelina sativa]
17 Hb_003752_050 0.3363209815 - - hypothetical protein JCGZ_15078 [Jatropha curcas]
18 Hb_001009_130 0.341802918 - - hypothetical protein JCGZ_11336 [Jatropha curcas]
19 Hb_000192_110 0.3520688488 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
20 Hb_091367_010 0.3585404959 - - hypothetical protein JCGZ_18029 [Jatropha curcas]

Gene co-expression network

sample Hb_000042_190 Hb_000042_190 Hb_052983_010 Hb_052983_010 Hb_000042_190--Hb_052983_010 Hb_001930_020 Hb_001930_020 Hb_000042_190--Hb_001930_020 Hb_002357_050 Hb_002357_050 Hb_000042_190--Hb_002357_050 Hb_005357_090 Hb_005357_090 Hb_000042_190--Hb_005357_090 Hb_124518_010 Hb_124518_010 Hb_000042_190--Hb_124518_010 Hb_005078_030 Hb_005078_030 Hb_000042_190--Hb_005078_030 Hb_005396_160 Hb_005396_160 Hb_052983_010--Hb_005396_160 Hb_012725_080 Hb_012725_080 Hb_052983_010--Hb_012725_080 Hb_001318_090 Hb_001318_090 Hb_052983_010--Hb_001318_090 Hb_004757_030 Hb_004757_030 Hb_052983_010--Hb_004757_030 Hb_052983_010--Hb_005078_030 Hb_042211_010 Hb_042211_010 Hb_052983_010--Hb_042211_010 Hb_001930_020--Hb_005357_090 Hb_001930_020--Hb_124518_010 Hb_001930_020--Hb_002357_050 Hb_001930_020--Hb_005078_030 Hb_001930_020--Hb_004757_030 Hb_000735_150 Hb_000735_150 Hb_001930_020--Hb_000735_150 Hb_002357_050--Hb_005078_030 Hb_002357_050--Hb_004757_030 Hb_002357_050--Hb_005357_090 Hb_002357_050--Hb_124518_010 Hb_002357_050--Hb_000735_150 Hb_005357_090--Hb_124518_010 Hb_005357_090--Hb_000735_150 Hb_005357_090--Hb_005078_030 Hb_005357_090--Hb_004757_030 Hb_124518_010--Hb_000735_150 Hb_124518_010--Hb_005078_030 Hb_124518_010--Hb_004757_030 Hb_005078_030--Hb_004757_030 Hb_005078_030--Hb_001318_090 Hb_005078_030--Hb_012725_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221986 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.316825 0.0924297 0

CAGE analysis