Hb_096346_010

Information

Type -
Description -
Location Contig96346: 1495-2737
Sequence    

Annotation

kegg
ID sot:102588467
description probable LRR receptor-like serine/threonine-protein kinase At3g47570-like
nr
ID CDP08525.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068UIZ3
description Coffea canephora DH200=94 genomic scaffold, scaffold_34 OS=Coffea canephora GN=GSCOC_T00027465001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096346_010 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_021420_010 0.2141318833 - - hypothetical protein CICLE_v10029508mg [Citrus clementina]
3 Hb_014324_020 0.2291039871 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
4 Hb_005976_050 0.264966428 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
5 Hb_001366_120 0.2651908222 - - unknown [Zea mays]
6 Hb_001606_080 0.2667538543 - - PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X2 [Jatropha curcas]
7 Hb_000099_210 0.2671794321 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
8 Hb_122408_010 0.2731652103 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_006495_080 0.2737597692 - - hypothetical protein PRUPE_ppb025438mg, partial [Prunus persica]
10 Hb_005410_040 0.2758669434 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
11 Hb_003106_080 0.2768463437 - - cell division cycle, putative [Ricinus communis]
12 Hb_001484_120 0.2771908386 - - hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]
13 Hb_000721_010 0.2802618488 - - conserved hypothetical protein [Ricinus communis]
14 Hb_034506_010 0.2827628463 - - PREDICTED: protein OS-9 homolog [Jatropha curcas]
15 Hb_000415_060 0.2836507676 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
16 Hb_046440_010 0.286107698 - - hypothetical protein JCGZ_06190 [Jatropha curcas]
17 Hb_001767_090 0.2876901262 - - ankyrin repeat protein [Bruguiera gymnorhiza]
18 Hb_000330_100 0.2881489738 - - hypothetical protein VITISV_011650 [Vitis vinifera]
19 Hb_000816_130 0.2895862763 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
20 Hb_000326_040 0.2904865967 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_096346_010 Hb_096346_010 Hb_021420_010 Hb_021420_010 Hb_096346_010--Hb_021420_010 Hb_014324_020 Hb_014324_020 Hb_096346_010--Hb_014324_020 Hb_005976_050 Hb_005976_050 Hb_096346_010--Hb_005976_050 Hb_001366_120 Hb_001366_120 Hb_096346_010--Hb_001366_120 Hb_001606_080 Hb_001606_080 Hb_096346_010--Hb_001606_080 Hb_000099_210 Hb_000099_210 Hb_096346_010--Hb_000099_210 Hb_000415_060 Hb_000415_060 Hb_021420_010--Hb_000415_060 Hb_029921_020 Hb_029921_020 Hb_021420_010--Hb_029921_020 Hb_000453_150 Hb_000453_150 Hb_021420_010--Hb_000453_150 Hb_003388_100 Hb_003388_100 Hb_021420_010--Hb_003388_100 Hb_000062_060 Hb_000062_060 Hb_021420_010--Hb_000062_060 Hb_000193_150 Hb_000193_150 Hb_021420_010--Hb_000193_150 Hb_005846_020 Hb_005846_020 Hb_014324_020--Hb_005846_020 Hb_005803_010 Hb_005803_010 Hb_014324_020--Hb_005803_010 Hb_002157_190 Hb_002157_190 Hb_014324_020--Hb_002157_190 Hb_000976_080 Hb_000976_080 Hb_014324_020--Hb_000976_080 Hb_001001_020 Hb_001001_020 Hb_014324_020--Hb_001001_020 Hb_010427_010 Hb_010427_010 Hb_005976_050--Hb_010427_010 Hb_000212_310 Hb_000212_310 Hb_005976_050--Hb_000212_310 Hb_000031_150 Hb_000031_150 Hb_005976_050--Hb_000031_150 Hb_007904_160 Hb_007904_160 Hb_005976_050--Hb_007904_160 Hb_000933_060 Hb_000933_060 Hb_005976_050--Hb_000933_060 Hb_000330_100 Hb_000330_100 Hb_005976_050--Hb_000330_100 Hb_004899_060 Hb_004899_060 Hb_001366_120--Hb_004899_060 Hb_001366_120--Hb_005976_050 Hb_000069_170 Hb_000069_170 Hb_001366_120--Hb_000069_170 Hb_001366_120--Hb_001606_080 Hb_078897_010 Hb_078897_010 Hb_001366_120--Hb_078897_010 Hb_031862_130 Hb_031862_130 Hb_001366_120--Hb_031862_130 Hb_001606_080--Hb_005976_050 Hb_026206_020 Hb_026206_020 Hb_001606_080--Hb_026206_020 Hb_027402_140 Hb_027402_140 Hb_001606_080--Hb_027402_140 Hb_000365_070 Hb_000365_070 Hb_001606_080--Hb_000365_070 Hb_006649_080 Hb_006649_080 Hb_001606_080--Hb_006649_080 Hb_007603_010 Hb_007603_010 Hb_000099_210--Hb_007603_010 Hb_008406_140 Hb_008406_140 Hb_000099_210--Hb_008406_140 Hb_000099_210--Hb_005976_050 Hb_000099_210--Hb_000031_150 Hb_002102_030 Hb_002102_030 Hb_000099_210--Hb_002102_030 Hb_007810_100 Hb_007810_100 Hb_000099_210--Hb_007810_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.273632 0.0317968 0.173069 0.111197 0.0757569 0.339044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.136999 0.242923 0.167631 0

CAGE analysis