Hb_007483_110

Information

Type -
Description -
Location Contig7483: 60114-62438
Sequence    

Annotation

kegg
ID pxb:103951258
description beta-xylosidase/alpha-L-arabinofuranosidase 1-like
nr
ID XP_011023042.1
description PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1-like [Populus euphratica]
swissprot
ID A5JTQ3
description Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1
trembl
ID A0A067J9R2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05335 PE=4 SV=1
Gene Ontology
ID GO:0004553
description beta-xylosidase alpha-l-arabinofuranosidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007483_110 0.0 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1-like [Populus euphratica]
2 Hb_002681_030 0.2815818973 - - PREDICTED: fatty-acid-binding protein 1-like [Jatropha curcas]
3 Hb_000684_240 0.2950990744 - - hypothetical protein RCOM_0819620 [Ricinus communis]
4 Hb_010098_070 0.2966704647 - - conserved hypothetical protein [Ricinus communis]
5 Hb_184212_010 0.3202987073 - - PREDICTED: uncharacterized protein LOC105113658 [Populus euphratica]
6 Hb_096346_010 0.321620266 - - unnamed protein product [Coffea canephora]
7 Hb_003893_040 0.3225189406 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_000453_110 0.3276942531 - - PREDICTED: alkaline/neutral invertase CINV2-like isoform X1 [Citrus sinensis]
9 Hb_000326_030 0.3387624256 - - hypothetical protein PRUPE_ppa013909mg [Prunus persica]
10 Hb_151628_010 0.3498118535 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_132303_010 0.3553466109 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_085226_010 0.3595442026 - - hypothetical protein POPTR_0002s03930g [Populus trichocarpa]
13 Hb_000009_540 0.3608440953 - - hypothetical protein JCGZ_12303 [Jatropha curcas]
14 Hb_002374_120 0.3621664125 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
15 Hb_006787_050 0.364675073 - - hypothetical protein JCGZ_23988 [Jatropha curcas]
16 Hb_000326_040 0.3663195857 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
17 Hb_000926_020 0.3674375803 - - -
18 Hb_003073_140 0.3689800135 - - F-box family protein [Theobroma cacao]
19 Hb_030736_010 0.3696516647 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006921_040 0.3705505384 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]

Gene co-expression network

sample Hb_007483_110 Hb_007483_110 Hb_002681_030 Hb_002681_030 Hb_007483_110--Hb_002681_030 Hb_000684_240 Hb_000684_240 Hb_007483_110--Hb_000684_240 Hb_010098_070 Hb_010098_070 Hb_007483_110--Hb_010098_070 Hb_184212_010 Hb_184212_010 Hb_007483_110--Hb_184212_010 Hb_096346_010 Hb_096346_010 Hb_007483_110--Hb_096346_010 Hb_003893_040 Hb_003893_040 Hb_007483_110--Hb_003893_040 Hb_001300_210 Hb_001300_210 Hb_002681_030--Hb_001300_210 Hb_002681_030--Hb_000684_240 Hb_004228_080 Hb_004228_080 Hb_002681_030--Hb_004228_080 Hb_032208_020 Hb_032208_020 Hb_002681_030--Hb_032208_020 Hb_000326_040 Hb_000326_040 Hb_002681_030--Hb_000326_040 Hb_007432_030 Hb_007432_030 Hb_002681_030--Hb_007432_030 Hb_006787_050 Hb_006787_050 Hb_000684_240--Hb_006787_050 Hb_000684_240--Hb_000326_040 Hb_000926_020 Hb_000926_020 Hb_000684_240--Hb_000926_020 Hb_005211_160 Hb_005211_160 Hb_000684_240--Hb_005211_160 Hb_000421_180 Hb_000421_180 Hb_000684_240--Hb_000421_180 Hb_000127_020 Hb_000127_020 Hb_010098_070--Hb_000127_020 Hb_002477_230 Hb_002477_230 Hb_010098_070--Hb_002477_230 Hb_007810_050 Hb_007810_050 Hb_010098_070--Hb_007810_050 Hb_175445_010 Hb_175445_010 Hb_010098_070--Hb_175445_010 Hb_003073_140 Hb_003073_140 Hb_010098_070--Hb_003073_140 Hb_007849_030 Hb_007849_030 Hb_010098_070--Hb_007849_030 Hb_000415_060 Hb_000415_060 Hb_184212_010--Hb_000415_060 Hb_005797_050 Hb_005797_050 Hb_184212_010--Hb_005797_050 Hb_002307_050 Hb_002307_050 Hb_184212_010--Hb_002307_050 Hb_000365_260 Hb_000365_260 Hb_184212_010--Hb_000365_260 Hb_012390_010 Hb_012390_010 Hb_184212_010--Hb_012390_010 Hb_085226_010 Hb_085226_010 Hb_184212_010--Hb_085226_010 Hb_021420_010 Hb_021420_010 Hb_096346_010--Hb_021420_010 Hb_014324_020 Hb_014324_020 Hb_096346_010--Hb_014324_020 Hb_005976_050 Hb_005976_050 Hb_096346_010--Hb_005976_050 Hb_001366_120 Hb_001366_120 Hb_096346_010--Hb_001366_120 Hb_001606_080 Hb_001606_080 Hb_096346_010--Hb_001606_080 Hb_000099_210 Hb_000099_210 Hb_096346_010--Hb_000099_210 Hb_004206_010 Hb_004206_010 Hb_003893_040--Hb_004206_010 Hb_004738_080 Hb_004738_080 Hb_003893_040--Hb_004738_080 Hb_001981_070 Hb_001981_070 Hb_003893_040--Hb_001981_070 Hb_003055_120 Hb_003055_120 Hb_003893_040--Hb_003055_120 Hb_057183_040 Hb_057183_040 Hb_003893_040--Hb_057183_040 Hb_000690_080 Hb_000690_080 Hb_003893_040--Hb_000690_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208391 0 0.0718072 0.0240519 0 0.0563802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.11525 0.107646 0.0230492 0

CAGE analysis