Hb_004738_080

Information

Type -
Description -
Location Contig4738: 96592-98692
Sequence    

Annotation

kegg
ID rcu:RCOM_1347480
description Transcription initiation factor TFIID subunit, putative
nr
ID NP_001295670.1
description transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
swissprot
ID Q6NQH4
description Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana GN=TAF13 PE=1 SV=1
trembl
ID E9JFW0
description Transcription initiation factor TFIID subunit OS=Jatropha curcas GN=JCGZ_14008 PE=2 SV=1
Gene Ontology
ID GO:0005634
description transcription initiation factor tfiid subunit 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44466: 96572-98846 , PASA_asmbl_44467: 96602-98811
cDNA
(Sanger)
(ID:Location)		 035_C11.ab1: 96574-98854

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004738_080 0.0 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
2 Hb_002477_240 0.0710851012 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
3 Hb_000703_140 0.0815661199 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
4 Hb_000260_080 0.081903291 - - thioredoxin H-type 1 [Hevea brasiliensis]
5 Hb_000494_020 0.0842159233 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
6 Hb_004931_090 0.0864724468 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
7 Hb_003687_110 0.0870320186 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
8 Hb_063716_050 0.0878204419 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
9 Hb_009767_120 0.0888170231 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
10 Hb_004884_220 0.0888293832 - - hypothetical protein 29 [Hevea brasiliensis]
11 Hb_002518_050 0.0893329875 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
12 Hb_000454_050 0.0897500855 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
13 Hb_003050_080 0.0902497474 - - 40S ribosomal protein S14, putative [Ricinus communis]
14 Hb_000270_270 0.0903146097 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
15 Hb_000025_530 0.0918564372 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
16 Hb_002874_190 0.0920355656 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
17 Hb_010436_070 0.0922304802 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
18 Hb_000473_040 0.0925267338 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
19 Hb_000933_180 0.0933273426 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
20 Hb_011794_070 0.0936327142 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004738_080 Hb_004738_080 Hb_002477_240 Hb_002477_240 Hb_004738_080--Hb_002477_240 Hb_000703_140 Hb_000703_140 Hb_004738_080--Hb_000703_140 Hb_000260_080 Hb_000260_080 Hb_004738_080--Hb_000260_080 Hb_000494_020 Hb_000494_020 Hb_004738_080--Hb_000494_020 Hb_004931_090 Hb_004931_090 Hb_004738_080--Hb_004931_090 Hb_003687_110 Hb_003687_110 Hb_004738_080--Hb_003687_110 Hb_001754_150 Hb_001754_150 Hb_002477_240--Hb_001754_150 Hb_042202_010 Hb_042202_010 Hb_002477_240--Hb_042202_010 Hb_000260_050 Hb_000260_050 Hb_002477_240--Hb_000260_050 Hb_002477_240--Hb_000703_140 Hb_009767_120 Hb_009767_120 Hb_002477_240--Hb_009767_120 Hb_000703_140--Hb_000260_080 Hb_011794_070 Hb_011794_070 Hb_000703_140--Hb_011794_070 Hb_027472_180 Hb_027472_180 Hb_000703_140--Hb_027472_180 Hb_009711_030 Hb_009711_030 Hb_000703_140--Hb_009711_030 Hb_000376_050 Hb_000376_050 Hb_000703_140--Hb_000376_050 Hb_000883_050 Hb_000883_050 Hb_000703_140--Hb_000883_050 Hb_000329_040 Hb_000329_040 Hb_000260_080--Hb_000329_040 Hb_000260_080--Hb_011794_070 Hb_000260_080--Hb_000883_050 Hb_000025_530 Hb_000025_530 Hb_000260_080--Hb_000025_530 Hb_000531_020 Hb_000531_020 Hb_000260_080--Hb_000531_020 Hb_010407_040 Hb_010407_040 Hb_000494_020--Hb_010407_040 Hb_002105_090 Hb_002105_090 Hb_000494_020--Hb_002105_090 Hb_003363_110 Hb_003363_110 Hb_000494_020--Hb_003363_110 Hb_000933_180 Hb_000933_180 Hb_000494_020--Hb_000933_180 Hb_000163_160 Hb_000163_160 Hb_000494_020--Hb_000163_160 Hb_001246_090 Hb_001246_090 Hb_000494_020--Hb_001246_090 Hb_000510_110 Hb_000510_110 Hb_004931_090--Hb_000510_110 Hb_004657_050 Hb_004657_050 Hb_004931_090--Hb_004657_050 Hb_165132_010 Hb_165132_010 Hb_004931_090--Hb_165132_010 Hb_004934_110 Hb_004934_110 Hb_004931_090--Hb_004934_110 Hb_002686_020 Hb_002686_020 Hb_004931_090--Hb_002686_020 Hb_001540_010 Hb_001540_010 Hb_004931_090--Hb_001540_010 Hb_002874_190 Hb_002874_190 Hb_003687_110--Hb_002874_190 Hb_003687_110--Hb_165132_010 Hb_010180_020 Hb_010180_020 Hb_003687_110--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_003687_110--Hb_001604_080 Hb_002007_060 Hb_002007_060 Hb_003687_110--Hb_002007_060 Hb_002411_170 Hb_002411_170 Hb_003687_110--Hb_002411_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
122.996 19.2225 43.296 42.4286 96.6393 84.0901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.3331 161.338 83.4076 24.8 22.2797

CAGE analysis