Hb_000223_180

Information

Type -
Description -
Location Contig223: 211311-211700
Sequence    

Annotation

kegg
ID rcu:RCOM_0495320
description Auxin-induced in root cultures protein 12 precursor, putative
nr
ID XP_002532005.1
description Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
swissprot
ID Q9FGK4
description Cytochrome b561 and DOMON domain-containing protein At5g47530 OS=Arabidopsis thaliana GN=At5g47530 PE=2 SV=1
trembl
ID B9T186
description Auxin-induced in root cultures protein 12, putative OS=Ricinus communis GN=RCOM_0495320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000223_180 0.0 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
2 Hb_003777_360 0.2642641867 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
3 Hb_011016_010 0.265657068 - - PREDICTED: auxin response factor 2-like [Jatropha curcas]
4 Hb_010519_030 0.2709522889 - - -
5 Hb_001079_020 0.2863175309 - - hypothetical protein POPTR_0012s13720g [Populus trichocarpa]
6 Hb_003106_120 0.3034558808 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
7 Hb_000130_230 0.3057458579 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
8 Hb_002253_060 0.3098848652 - - conserved hypothetical protein [Ricinus communis]
9 Hb_013766_010 0.3129111025 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
10 Hb_000836_490 0.3170691288 - - PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
11 Hb_002284_190 0.3249136578 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
12 Hb_008014_030 0.3274782969 - - Aquaporin NIP1.1, putative [Ricinus communis]
13 Hb_002805_020 0.3282323366 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
14 Hb_007157_030 0.3335155494 - - PREDICTED: protein LURP-one-related 6-like [Jatropha curcas]
15 Hb_018464_060 0.3373555841 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_003435_060 0.3385624477 - - carbonic anhydrase, putative [Ricinus communis]
17 Hb_131060_010 0.3415455391 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
18 Hb_007885_050 0.3424855986 - - PREDICTED: lignin-forming anionic peroxidase-like [Jatropha curcas]
19 Hb_001798_020 0.3434070531 - - PREDICTED: uncharacterized protein LOC104594032 [Nelumbo nucifera]
20 Hb_011077_020 0.3451178896 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000223_180 Hb_000223_180 Hb_003777_360 Hb_003777_360 Hb_000223_180--Hb_003777_360 Hb_011016_010 Hb_011016_010 Hb_000223_180--Hb_011016_010 Hb_010519_030 Hb_010519_030 Hb_000223_180--Hb_010519_030 Hb_001079_020 Hb_001079_020 Hb_000223_180--Hb_001079_020 Hb_003106_120 Hb_003106_120 Hb_000223_180--Hb_003106_120 Hb_000130_230 Hb_000130_230 Hb_000223_180--Hb_000130_230 Hb_000117_100 Hb_000117_100 Hb_003777_360--Hb_000117_100 Hb_009974_020 Hb_009974_020 Hb_003777_360--Hb_009974_020 Hb_000836_490 Hb_000836_490 Hb_003777_360--Hb_000836_490 Hb_028271_020 Hb_028271_020 Hb_003777_360--Hb_028271_020 Hb_003777_360--Hb_000130_230 Hb_001488_370 Hb_001488_370 Hb_003777_360--Hb_001488_370 Hb_131060_010 Hb_131060_010 Hb_011016_010--Hb_131060_010 Hb_026527_020 Hb_026527_020 Hb_011016_010--Hb_026527_020 Hb_011016_010--Hb_000836_490 Hb_000594_090 Hb_000594_090 Hb_011016_010--Hb_000594_090 Hb_007885_050 Hb_007885_050 Hb_011016_010--Hb_007885_050 Hb_010519_030--Hb_003777_360 Hb_001638_070 Hb_001638_070 Hb_010519_030--Hb_001638_070 Hb_004324_160 Hb_004324_160 Hb_010519_030--Hb_004324_160 Hb_001951_250 Hb_001951_250 Hb_010519_030--Hb_001951_250 Hb_010519_030--Hb_000130_230 Hb_013766_010 Hb_013766_010 Hb_001079_020--Hb_013766_010 Hb_002805_020 Hb_002805_020 Hb_001079_020--Hb_002805_020 Hb_002253_060 Hb_002253_060 Hb_001079_020--Hb_002253_060 Hb_002486_010 Hb_002486_010 Hb_001079_020--Hb_002486_010 Hb_006420_090 Hb_006420_090 Hb_001079_020--Hb_006420_090 Hb_105328_030 Hb_105328_030 Hb_001079_020--Hb_105328_030 Hb_003106_120--Hb_002486_010 Hb_003106_120--Hb_013766_010 Hb_003435_060 Hb_003435_060 Hb_003106_120--Hb_003435_060 Hb_001565_110 Hb_001565_110 Hb_003106_120--Hb_001565_110 Hb_007747_180 Hb_007747_180 Hb_003106_120--Hb_007747_180 Hb_003106_120--Hb_002253_060 Hb_000130_230--Hb_001951_250 Hb_003891_080 Hb_003891_080 Hb_000130_230--Hb_003891_080 Hb_001477_150 Hb_001477_150 Hb_000130_230--Hb_001477_150 Hb_001767_050 Hb_001767_050 Hb_000130_230--Hb_001767_050 Hb_000892_070 Hb_000892_070 Hb_000130_230--Hb_000892_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.188407 0.0695402 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.493245 0.261023 0.35407 0

CAGE analysis