Hb_003106_120

Information

Type -
Description -
Location Contig3106: 74328-74582
Sequence    

Annotation

kegg
ID rcu:RCOM_1512610
description hypothetical protein
nr
ID XP_012080143.1
description PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KH50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_120 0.0 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
2 Hb_002486_010 0.225145895 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
3 Hb_013766_010 0.2276758791 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
4 Hb_003435_060 0.2294123814 - - carbonic anhydrase, putative [Ricinus communis]
5 Hb_001565_110 0.2681207399 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
6 Hb_007747_180 0.2712848775 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
7 Hb_002253_060 0.2729255883 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002805_020 0.2733106727 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
9 Hb_008014_030 0.2767469663 - - Aquaporin NIP1.1, putative [Ricinus communis]
10 Hb_018464_060 0.284355015 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000260_290 0.2911082558 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
12 Hb_000300_130 0.2938340446 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
13 Hb_024621_030 0.294069713 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
14 Hb_105328_030 0.2957714414 - - Putative retroelement [Oryza sativa Japonica Group]
15 Hb_000025_430 0.2978566982 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
16 Hb_000223_180 0.3034558808 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
17 Hb_003835_040 0.3040737684 - - PREDICTED: UDP-glycosyltransferase 91A1-like [Jatropha curcas]
18 Hb_082182_010 0.3059035929 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
19 Hb_031862_040 0.305975393 - - purine transporter, putative [Ricinus communis]
20 Hb_007747_140 0.3064000272 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003106_120 Hb_003106_120 Hb_002486_010 Hb_002486_010 Hb_003106_120--Hb_002486_010 Hb_013766_010 Hb_013766_010 Hb_003106_120--Hb_013766_010 Hb_003435_060 Hb_003435_060 Hb_003106_120--Hb_003435_060 Hb_001565_110 Hb_001565_110 Hb_003106_120--Hb_001565_110 Hb_007747_180 Hb_007747_180 Hb_003106_120--Hb_007747_180 Hb_002253_060 Hb_002253_060 Hb_003106_120--Hb_002253_060 Hb_002805_020 Hb_002805_020 Hb_002486_010--Hb_002805_020 Hb_002486_010--Hb_007747_180 Hb_082182_010 Hb_082182_010 Hb_002486_010--Hb_082182_010 Hb_002486_010--Hb_013766_010 Hb_007747_140 Hb_007747_140 Hb_002486_010--Hb_007747_140 Hb_000011_420 Hb_000011_420 Hb_002486_010--Hb_000011_420 Hb_013766_010--Hb_007747_180 Hb_013766_010--Hb_001565_110 Hb_001079_020 Hb_001079_020 Hb_013766_010--Hb_001079_020 Hb_013766_010--Hb_002253_060 Hb_013766_010--Hb_082182_010 Hb_008014_030 Hb_008014_030 Hb_003435_060--Hb_008014_030 Hb_001045_050 Hb_001045_050 Hb_003435_060--Hb_001045_050 Hb_000300_130 Hb_000300_130 Hb_003435_060--Hb_000300_130 Hb_024621_030 Hb_024621_030 Hb_003435_060--Hb_024621_030 Hb_001720_060 Hb_001720_060 Hb_003435_060--Hb_001720_060 Hb_000260_290 Hb_000260_290 Hb_001565_110--Hb_000260_290 Hb_000025_430 Hb_000025_430 Hb_001565_110--Hb_000025_430 Hb_001565_110--Hb_082182_010 Hb_005439_040 Hb_005439_040 Hb_001565_110--Hb_005439_040 Hb_140049_050 Hb_140049_050 Hb_001565_110--Hb_140049_050 Hb_007747_180--Hb_082182_010 Hb_002291_010 Hb_002291_010 Hb_007747_180--Hb_002291_010 Hb_007747_180--Hb_002805_020 Hb_000297_020 Hb_000297_020 Hb_007747_180--Hb_000297_020 Hb_002253_060--Hb_001720_060 Hb_004291_010 Hb_004291_010 Hb_002253_060--Hb_004291_010 Hb_002253_060--Hb_001079_020 Hb_000836_490 Hb_000836_490 Hb_002253_060--Hb_000836_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 24.5968 1.75775 0 0.994906 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.70851 16.7928 29.4771 53.7919 1.29072

CAGE analysis