Hb_000836_150

Information

Type -
Description -
Location Contig836: 133439-135819
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13070g
description POPTRDRAFT_646651; hypothetical protein
nr
ID XP_002303601.2
description hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PCV7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13070g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_150 0.0 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
2 Hb_067034_020 0.1300007473 - - PREDICTED: iridoid synthase [Jatropha curcas]
3 Hb_001437_160 0.2023204634 - - PREDICTED: high-affinity nitrate transporter 2.1-like [Jatropha curcas]
4 Hb_004728_030 0.2295448651 - - hypothetical protein, partial [Lactobacillus brevis]
5 Hb_132840_120 0.2349392317 - - Vacuolar protein sorting-associated protein 8 like [Glycine soja]
6 Hb_000740_020 0.2431606922 transcription factor TF Family: MYB-related asymmetric leaves1 and rough sheath, putative [Ricinus communis]
7 Hb_012092_070 0.2615303832 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
8 Hb_006746_010 0.2618509602 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
9 Hb_019818_010 0.2797098767 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
10 Hb_001541_220 0.2841325337 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
11 Hb_001226_010 0.2860527128 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
12 Hb_008609_030 0.2904455195 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_103739_010 0.2938601527 - - sodium/hydrogen exchanger, putative [Ricinus communis]
14 Hb_001184_140 0.294809729 - - hypothetical protein B456_008G022200 [Gossypium raimondii]
15 Hb_017400_010 0.2998077987 - - unnamed protein product [Vitis vinifera]
16 Hb_001439_090 0.3063794096 - - conserved hypothetical protein [Ricinus communis]
17 Hb_146902_010 0.3117593524 - - conserved hypothetical protein [Ricinus communis]
18 Hb_107429_010 0.3203931482 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
19 Hb_001102_310 0.3298132832 - - Protein AFR, putative [Ricinus communis]
20 Hb_001143_150 0.3367537818 - - PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]

Gene co-expression network

sample Hb_000836_150 Hb_000836_150 Hb_067034_020 Hb_067034_020 Hb_000836_150--Hb_067034_020 Hb_001437_160 Hb_001437_160 Hb_000836_150--Hb_001437_160 Hb_004728_030 Hb_004728_030 Hb_000836_150--Hb_004728_030 Hb_132840_120 Hb_132840_120 Hb_000836_150--Hb_132840_120 Hb_000740_020 Hb_000740_020 Hb_000836_150--Hb_000740_020 Hb_012092_070 Hb_012092_070 Hb_000836_150--Hb_012092_070 Hb_001541_220 Hb_001541_220 Hb_067034_020--Hb_001541_220 Hb_146902_010 Hb_146902_010 Hb_067034_020--Hb_146902_010 Hb_001102_310 Hb_001102_310 Hb_067034_020--Hb_001102_310 Hb_119808_020 Hb_119808_020 Hb_067034_020--Hb_119808_020 Hb_067034_020--Hb_000740_020 Hb_001437_160--Hb_000740_020 Hb_107429_010 Hb_107429_010 Hb_001437_160--Hb_107429_010 Hb_001226_010 Hb_001226_010 Hb_001437_160--Hb_001226_010 Hb_103739_010 Hb_103739_010 Hb_001437_160--Hb_103739_010 Hb_011344_060 Hb_011344_060 Hb_001437_160--Hb_011344_060 Hb_004728_030--Hb_132840_120 Hb_006746_010 Hb_006746_010 Hb_004728_030--Hb_006746_010 Hb_004728_030--Hb_012092_070 Hb_019818_010 Hb_019818_010 Hb_004728_030--Hb_019818_010 Hb_008609_030 Hb_008609_030 Hb_004728_030--Hb_008609_030 Hb_001184_140 Hb_001184_140 Hb_004728_030--Hb_001184_140 Hb_132840_120--Hb_012092_070 Hb_132840_120--Hb_019818_010 Hb_017400_010 Hb_017400_010 Hb_132840_120--Hb_017400_010 Hb_132840_120--Hb_001184_140 Hb_132840_120--Hb_006746_010 Hb_000740_020--Hb_107429_010 Hb_000740_020--Hb_001226_010 Hb_001143_150 Hb_001143_150 Hb_000740_020--Hb_001143_150 Hb_000917_170 Hb_000917_170 Hb_000740_020--Hb_000917_170 Hb_012092_070--Hb_019818_010 Hb_012092_070--Hb_017400_010 Hb_002367_030 Hb_002367_030 Hb_012092_070--Hb_002367_030 Hb_012092_070--Hb_001184_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0167441 0.0722591 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0762043 0 0 0

CAGE analysis