Hb_000258_180

Information

Type -
Description -
Location Contig258: 154785-155730
Sequence    

Annotation

kegg
ID vvi:100260235
description glutathione S-transferase U10-like
nr
ID XP_002270113.2
description PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
swissprot
ID Q9CA57
description Glutathione S-transferase U10 OS=Arabidopsis thaliana GN=GSTU10 PE=2 SV=1
trembl
ID F6HPC2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26819: 154757-155289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_180 0.0 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
2 Hb_000012_070 0.088995292 - - cytochrome P450, putative [Ricinus communis]
3 Hb_032202_250 0.1623303032 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
4 Hb_000045_210 0.1714765665 - - -
5 Hb_034482_040 0.1734641119 - - aspartate kinase, partial [Francisella tularensis]
6 Hb_003226_240 0.1751841203 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
7 Hb_001433_100 0.1771688492 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
8 Hb_012573_010 0.1807148985 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
9 Hb_002989_040 0.1856841266 - - hypothetical protein 1 [Hevea brasiliensis]
10 Hb_000920_320 0.1909685067 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
11 Hb_001266_030 0.1955420061 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
12 Hb_000284_190 0.1984733082 - - lactoylglutathione lyase, putative [Ricinus communis]
13 Hb_004968_070 0.1985111152 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001085_180 0.2014089017 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000300_210 0.205693656 - - gd2b, putative [Ricinus communis]
16 Hb_000062_300 0.2085489835 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
17 Hb_141194_010 0.2087520685 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
18 Hb_001140_240 0.215573636 - - metal ion binding protein, putative [Ricinus communis]
19 Hb_183612_080 0.217797512 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
20 Hb_027892_040 0.220912214 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_180 Hb_000258_180 Hb_000012_070 Hb_000012_070 Hb_000258_180--Hb_000012_070 Hb_032202_250 Hb_032202_250 Hb_000258_180--Hb_032202_250 Hb_000045_210 Hb_000045_210 Hb_000258_180--Hb_000045_210 Hb_034482_040 Hb_034482_040 Hb_000258_180--Hb_034482_040 Hb_003226_240 Hb_003226_240 Hb_000258_180--Hb_003226_240 Hb_001433_100 Hb_001433_100 Hb_000258_180--Hb_001433_100 Hb_000062_300 Hb_000062_300 Hb_000012_070--Hb_000062_300 Hb_000012_070--Hb_032202_250 Hb_012573_010 Hb_012573_010 Hb_000012_070--Hb_012573_010 Hb_000284_190 Hb_000284_190 Hb_000012_070--Hb_000284_190 Hb_000012_070--Hb_034482_040 Hb_032202_250--Hb_003226_240 Hb_001842_080 Hb_001842_080 Hb_032202_250--Hb_001842_080 Hb_000300_210 Hb_000300_210 Hb_032202_250--Hb_000300_210 Hb_032202_250--Hb_001433_100 Hb_032202_250--Hb_034482_040 Hb_002989_040 Hb_002989_040 Hb_032202_250--Hb_002989_040 Hb_141194_010 Hb_141194_010 Hb_000045_210--Hb_141194_010 Hb_044653_060 Hb_044653_060 Hb_000045_210--Hb_044653_060 Hb_027892_040 Hb_027892_040 Hb_000045_210--Hb_027892_040 Hb_001266_030 Hb_001266_030 Hb_000045_210--Hb_001266_030 Hb_012053_010 Hb_012053_010 Hb_000045_210--Hb_012053_010 Hb_000431_160 Hb_000431_160 Hb_000045_210--Hb_000431_160 Hb_034482_040--Hb_002989_040 Hb_034482_040--Hb_003226_240 Hb_034482_040--Hb_001433_100 Hb_023051_020 Hb_023051_020 Hb_034482_040--Hb_023051_020 Hb_034482_040--Hb_141194_010 Hb_003226_240--Hb_002989_040 Hb_003226_240--Hb_001433_100 Hb_003226_240--Hb_023051_020 Hb_000920_320 Hb_000920_320 Hb_003226_240--Hb_000920_320 Hb_001433_100--Hb_000300_210 Hb_008066_030 Hb_008066_030 Hb_001433_100--Hb_008066_030 Hb_000329_660 Hb_000329_660 Hb_001433_100--Hb_000329_660
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.168389 0.0750403 0.235135 0.190843 0.0561567 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50721 10.5147 1.19267 0.960494 0

CAGE analysis