Hb_000946_160

Information

Type transcription factor
Description TF Family: GNAT
Location Contig946: 200151-200375
Sequence    

Annotation

kegg
ID rcu:RCOM_1465100
description N-acetyltransferase, putative
nr
ID XP_012080496.1
description PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
swissprot
ID Q5KQI6
description Probable acetyltransferase NSI OS=Oryza sativa subsp. japonica GN=NSI PE=2 SV=1
trembl
ID A0A067KGN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11806 PE=4 SV=1
Gene Ontology
ID GO:0009507
description uncharacterized n-acetyltransferase ycf52

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000946_160 0.0 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
2 Hb_001864_090 0.1479507168 - - -
3 Hb_021888_040 0.2816291788 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
4 Hb_003996_030 0.285571025 - - -
5 Hb_000243_370 0.2874134097 - - hypothetical protein VITISV_010022 [Vitis vinifera]
6 Hb_000261_170 0.288400656 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
7 Hb_003206_100 0.2942465037 - - -
8 Hb_078804_010 0.3017228803 - - kinase, putative [Ricinus communis]
9 Hb_004785_050 0.3205551383 - - PREDICTED: serine decarboxylase [Jatropha curcas]
10 Hb_001085_140 0.3217254795 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003551_010 0.324535379 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
12 Hb_009051_020 0.3273403598 - - Thioredoxin O1 [Morus notabilis]
13 Hb_001488_310 0.3343274314 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
14 Hb_128473_010 0.3375098769 - - -
15 Hb_000329_260 0.3377619274 - - hypothetical protein MIMGU_mgv1a016162mg [Erythranthe guttata]
16 Hb_001277_060 0.3387271055 - - ADP-ribosylation factor-like protein 5 [Morus notabilis]
17 Hb_004158_100 0.3403359048 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
18 Hb_001828_100 0.3404241728 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
19 Hb_034507_040 0.3417789146 - - peptide transporter, putative [Ricinus communis]
20 Hb_052640_010 0.3434038753 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000946_160 Hb_000946_160 Hb_001864_090 Hb_001864_090 Hb_000946_160--Hb_001864_090 Hb_021888_040 Hb_021888_040 Hb_000946_160--Hb_021888_040 Hb_003996_030 Hb_003996_030 Hb_000946_160--Hb_003996_030 Hb_000243_370 Hb_000243_370 Hb_000946_160--Hb_000243_370 Hb_000261_170 Hb_000261_170 Hb_000946_160--Hb_000261_170 Hb_003206_100 Hb_003206_100 Hb_000946_160--Hb_003206_100 Hb_001922_180 Hb_001922_180 Hb_001864_090--Hb_001922_180 Hb_005489_010 Hb_005489_010 Hb_001864_090--Hb_005489_010 Hb_001864_090--Hb_003206_100 Hb_002025_210 Hb_002025_210 Hb_001864_090--Hb_002025_210 Hb_001864_090--Hb_021888_040 Hb_002379_040 Hb_002379_040 Hb_021888_040--Hb_002379_040 Hb_011200_010 Hb_011200_010 Hb_021888_040--Hb_011200_010 Hb_009051_020 Hb_009051_020 Hb_021888_040--Hb_009051_020 Hb_003551_010 Hb_003551_010 Hb_021888_040--Hb_003551_010 Hb_021888_040--Hb_003206_100 Hb_059978_010 Hb_059978_010 Hb_021888_040--Hb_059978_010 Hb_001979_030 Hb_001979_030 Hb_003996_030--Hb_001979_030 Hb_003996_030--Hb_001864_090 Hb_004158_100 Hb_004158_100 Hb_003996_030--Hb_004158_100 Hb_015941_050 Hb_015941_050 Hb_003996_030--Hb_015941_050 Hb_001277_060 Hb_001277_060 Hb_003996_030--Hb_001277_060 Hb_099298_010 Hb_099298_010 Hb_000243_370--Hb_099298_010 Hb_001247_030 Hb_001247_030 Hb_000243_370--Hb_001247_030 Hb_004079_050 Hb_004079_050 Hb_000243_370--Hb_004079_050 Hb_001085_140 Hb_001085_140 Hb_000243_370--Hb_001085_140 Hb_002016_030 Hb_002016_030 Hb_000243_370--Hb_002016_030 Hb_000243_370--Hb_021888_040 Hb_128473_010 Hb_128473_010 Hb_000261_170--Hb_128473_010 Hb_001355_120 Hb_001355_120 Hb_000261_170--Hb_001355_120 Hb_000649_340 Hb_000649_340 Hb_000261_170--Hb_000649_340 Hb_001828_100 Hb_001828_100 Hb_000261_170--Hb_001828_100 Hb_000261_170--Hb_004158_100 Hb_004785_050 Hb_004785_050 Hb_000261_170--Hb_004785_050 Hb_003206_100--Hb_009051_020 Hb_003206_100--Hb_003551_010 Hb_007273_020 Hb_007273_020 Hb_003206_100--Hb_007273_020 Hb_003206_100--Hb_011200_010 Hb_002656_020 Hb_002656_020 Hb_003206_100--Hb_002656_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.725358 0 0 6.71903 0.425924 0.48429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.899412 2.15753 0 0 0

CAGE analysis