Hb_000243_370

Information

Type -
Description -
Location Contig243: 331410-331949
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_111893
description HTR1512; histone H3
nr
ID CAN70652.1
description hypothetical protein VITISV_010022 [Vitis vinifera]
swissprot
ID Q71H73
description Histone H3.3 OS=Vitis vinifera PE=2 SV=3
trembl
ID I1LNI7
description Histone H3 OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25408: 331221-333397 , PASA_asmbl_25409: 331246-333347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_370 0.0 - - hypothetical protein VITISV_010022 [Vitis vinifera]
2 Hb_099298_010 0.2165622817 - - -
3 Hb_001247_030 0.2288896152 - - -
4 Hb_004079_050 0.2386407331 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
5 Hb_001085_140 0.2545538271 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002016_030 0.2626696587 - - conserved hypothetical protein [Ricinus communis]
7 Hb_021888_040 0.2656788887 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
8 Hb_000562_060 0.2691547386 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
9 Hb_178968_040 0.2740626102 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000028_260 0.2763146136 - - hypothetical protein glysoja_041948 [Glycine soja]
11 Hb_188313_010 0.2787391746 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
12 Hb_000350_040 0.2872858145 - - -
13 Hb_000946_160 0.2874134097 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
14 Hb_000258_060 0.2879314 - - conserved hypothetical protein [Ricinus communis]
15 Hb_017002_010 0.2898072298 - - PREDICTED: expansin-A15-like [Jatropha curcas]
16 Hb_004158_100 0.2962978362 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
17 Hb_013394_100 0.2964079002 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
18 Hb_172921_010 0.2995070989 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
19 Hb_001157_210 0.3013248674 - - hypothetical protein CISIN_1g038260mg [Citrus sinensis]
20 Hb_001635_010 0.3014930082 - - -

Gene co-expression network

sample Hb_000243_370 Hb_000243_370 Hb_099298_010 Hb_099298_010 Hb_000243_370--Hb_099298_010 Hb_001247_030 Hb_001247_030 Hb_000243_370--Hb_001247_030 Hb_004079_050 Hb_004079_050 Hb_000243_370--Hb_004079_050 Hb_001085_140 Hb_001085_140 Hb_000243_370--Hb_001085_140 Hb_002016_030 Hb_002016_030 Hb_000243_370--Hb_002016_030 Hb_021888_040 Hb_021888_040 Hb_000243_370--Hb_021888_040 Hb_000034_090 Hb_000034_090 Hb_099298_010--Hb_000034_090 Hb_013394_100 Hb_013394_100 Hb_099298_010--Hb_013394_100 Hb_188313_010 Hb_188313_010 Hb_099298_010--Hb_188313_010 Hb_011037_020 Hb_011037_020 Hb_099298_010--Hb_011037_020 Hb_006162_020 Hb_006162_020 Hb_099298_010--Hb_006162_020 Hb_182713_020 Hb_182713_020 Hb_099298_010--Hb_182713_020 Hb_001247_030--Hb_188313_010 Hb_004125_070 Hb_004125_070 Hb_001247_030--Hb_004125_070 Hb_000028_260 Hb_000028_260 Hb_001247_030--Hb_000028_260 Hb_008185_020 Hb_008185_020 Hb_001247_030--Hb_008185_020 Hb_184541_010 Hb_184541_010 Hb_001247_030--Hb_184541_010 Hb_001247_030--Hb_004079_050 Hb_006634_110 Hb_006634_110 Hb_004079_050--Hb_006634_110 Hb_178968_040 Hb_178968_040 Hb_004079_050--Hb_178968_040 Hb_017002_010 Hb_017002_010 Hb_004079_050--Hb_017002_010 Hb_122636_010 Hb_122636_010 Hb_004079_050--Hb_122636_010 Hb_004079_050--Hb_188313_010 Hb_002367_030 Hb_002367_030 Hb_001085_140--Hb_002367_030 Hb_003540_180 Hb_003540_180 Hb_001085_140--Hb_003540_180 Hb_172921_010 Hb_172921_010 Hb_001085_140--Hb_172921_010 Hb_000350_040 Hb_000350_040 Hb_001085_140--Hb_000350_040 Hb_017400_010 Hb_017400_010 Hb_001085_140--Hb_017400_010 Hb_001102_310 Hb_001102_310 Hb_001085_140--Hb_001102_310 Hb_000953_120 Hb_000953_120 Hb_002016_030--Hb_000953_120 Hb_009119_010 Hb_009119_010 Hb_002016_030--Hb_009119_010 Hb_041601_010 Hb_041601_010 Hb_002016_030--Hb_041601_010 Hb_000025_080 Hb_000025_080 Hb_002016_030--Hb_000025_080 Hb_011200_010 Hb_011200_010 Hb_002016_030--Hb_011200_010 Hb_010367_020 Hb_010367_020 Hb_002016_030--Hb_010367_020 Hb_002379_040 Hb_002379_040 Hb_021888_040--Hb_002379_040 Hb_021888_040--Hb_011200_010 Hb_009051_020 Hb_009051_020 Hb_021888_040--Hb_009051_020 Hb_003551_010 Hb_003551_010 Hb_021888_040--Hb_003551_010 Hb_003206_100 Hb_003206_100 Hb_021888_040--Hb_003206_100 Hb_059978_010 Hb_059978_010 Hb_021888_040--Hb_059978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.307041 0.175231 2.36415 198.69 0.314102 28.0486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6184 47.4368 4.10953 1.46574 9.82219

CAGE analysis