Hb_015941_050

Information

Type -
Description -
Location Contig15941: 57629-58494
Sequence    

Annotation

kegg
ID rcu:RCOM_1108230
description hypothetical protein
nr
ID XP_002531502.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZT3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1108230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14171: 57604-58434 , PASA_asmbl_14173: 57712-58336
cDNA
(Sanger)
(ID:Location)		 020_J01.ab1: 57610-58392 , 045_B20.ab1: 57614-58434 , 046_I24.ab1: 57604-58390

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015941_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002205_170 0.1841604928 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
3 Hb_005144_010 0.1989324626 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
4 Hb_001322_070 0.2012845325 - - protein with unknown function [Ricinus communis]
5 Hb_001584_240 0.204643023 - - ADP-ribosylation factor [Gossypium barbadense]
6 Hb_008206_100 0.2052082875 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
7 Hb_000483_400 0.2080614886 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
8 Hb_033376_010 0.2081030801 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
9 Hb_001208_040 0.2179755798 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
10 Hb_000240_120 0.2228629546 - - ras-related protein Rab-5B [Reticulomyxa filosa]
11 Hb_175933_010 0.2272981522 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
12 Hb_003994_020 0.2310959549 - - -
13 Hb_001195_070 0.2328928608 - - PREDICTED: protein RER1B-like [Jatropha curcas]
14 Hb_001016_080 0.2331954908 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
15 Hb_000215_330 0.2350772538 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
16 Hb_002314_010 0.2364197431 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
17 Hb_007553_020 0.2381145688 - - conserved hypothetical protein [Ricinus communis]
18 Hb_079483_020 0.2381866274 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X2 [Jatropha curcas]
19 Hb_003103_010 0.2383673086 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012340_050 0.2383733795 - - PREDICTED: actin-related protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_015941_050 Hb_015941_050 Hb_002205_170 Hb_002205_170 Hb_015941_050--Hb_002205_170 Hb_005144_010 Hb_005144_010 Hb_015941_050--Hb_005144_010 Hb_001322_070 Hb_001322_070 Hb_015941_050--Hb_001322_070 Hb_001584_240 Hb_001584_240 Hb_015941_050--Hb_001584_240 Hb_008206_100 Hb_008206_100 Hb_015941_050--Hb_008206_100 Hb_000483_400 Hb_000483_400 Hb_015941_050--Hb_000483_400 Hb_001195_070 Hb_001195_070 Hb_002205_170--Hb_001195_070 Hb_000175_260 Hb_000175_260 Hb_002205_170--Hb_000175_260 Hb_002205_170--Hb_001584_240 Hb_000007_200 Hb_000007_200 Hb_002205_170--Hb_000007_200 Hb_000742_030 Hb_000742_030 Hb_002205_170--Hb_000742_030 Hb_012340_050 Hb_012340_050 Hb_005144_010--Hb_012340_050 Hb_000365_250 Hb_000365_250 Hb_005144_010--Hb_000365_250 Hb_002314_010 Hb_002314_010 Hb_005144_010--Hb_002314_010 Hb_000107_300 Hb_000107_300 Hb_005144_010--Hb_000107_300 Hb_045003_010 Hb_045003_010 Hb_005144_010--Hb_045003_010 Hb_145880_020 Hb_145880_020 Hb_005144_010--Hb_145880_020 Hb_098315_020 Hb_098315_020 Hb_001322_070--Hb_098315_020 Hb_005460_060 Hb_005460_060 Hb_001322_070--Hb_005460_060 Hb_000009_290 Hb_000009_290 Hb_001322_070--Hb_000009_290 Hb_000465_510 Hb_000465_510 Hb_001322_070--Hb_000465_510 Hb_000215_330 Hb_000215_330 Hb_001322_070--Hb_000215_330 Hb_005306_070 Hb_005306_070 Hb_001322_070--Hb_005306_070 Hb_002960_130 Hb_002960_130 Hb_001584_240--Hb_002960_130 Hb_000671_130 Hb_000671_130 Hb_001584_240--Hb_000671_130 Hb_001584_240--Hb_001195_070 Hb_048476_060 Hb_048476_060 Hb_001584_240--Hb_048476_060 Hb_083380_020 Hb_083380_020 Hb_001584_240--Hb_083380_020 Hb_001208_040 Hb_001208_040 Hb_001584_240--Hb_001208_040 Hb_002154_110 Hb_002154_110 Hb_008206_100--Hb_002154_110 Hb_003103_010 Hb_003103_010 Hb_008206_100--Hb_003103_010 Hb_175933_010 Hb_175933_010 Hb_008206_100--Hb_175933_010 Hb_000260_790 Hb_000260_790 Hb_008206_100--Hb_000260_790 Hb_003994_020 Hb_003994_020 Hb_008206_100--Hb_003994_020 Hb_008642_030 Hb_008642_030 Hb_008206_100--Hb_008642_030 Hb_000796_020 Hb_000796_020 Hb_000483_400--Hb_000796_020 Hb_000240_120 Hb_000240_120 Hb_000483_400--Hb_000240_120 Hb_000483_400--Hb_175933_010 Hb_004453_070 Hb_004453_070 Hb_000483_400--Hb_004453_070 Hb_000683_100 Hb_000683_100 Hb_000483_400--Hb_000683_100 Hb_000217_020 Hb_000217_020 Hb_000483_400--Hb_000217_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.62351 1.92724 2.49197 23.9021 0.551267 2.14031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.40456 20.2443 2.38149 2.24833 4.39379

CAGE analysis