Hb_003994_020

Information

Type -
Description -
Location Contig3994: 5840-6703
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39719: 7114-8539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_020 0.0 - - -
2 Hb_008206_100 0.1550500291 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
3 Hb_001208_040 0.1610670724 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
4 Hb_003103_010 0.1612468525 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001208_030 0.168343326 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001584_240 0.1749281841 - - ADP-ribosylation factor [Gossypium barbadense]
7 Hb_175933_010 0.1792617918 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
8 Hb_002477_010 0.1808723272 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000345_080 0.1819258975 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
10 Hb_002154_110 0.1830357976 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
11 Hb_000294_050 0.1929185232 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
12 Hb_006153_030 0.1944292509 - - PREDICTED: probable transaldolase [Jatropha curcas]
13 Hb_008642_030 0.1951596782 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
14 Hb_005144_010 0.2035416461 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
15 Hb_000027_210 0.2050461199 - - Os01g0689300, partial [Oryza sativa Japonica Group]
16 Hb_000016_060 0.2071252507 - - mads box protein, putative [Ricinus communis]
17 Hb_002876_020 0.2161027863 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
18 Hb_009680_020 0.2174267353 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
19 Hb_002314_010 0.2179748826 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
20 Hb_000217_020 0.2179992498 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003994_020 Hb_003994_020 Hb_008206_100 Hb_008206_100 Hb_003994_020--Hb_008206_100 Hb_001208_040 Hb_001208_040 Hb_003994_020--Hb_001208_040 Hb_003103_010 Hb_003103_010 Hb_003994_020--Hb_003103_010 Hb_001208_030 Hb_001208_030 Hb_003994_020--Hb_001208_030 Hb_001584_240 Hb_001584_240 Hb_003994_020--Hb_001584_240 Hb_175933_010 Hb_175933_010 Hb_003994_020--Hb_175933_010 Hb_002154_110 Hb_002154_110 Hb_008206_100--Hb_002154_110 Hb_008206_100--Hb_003103_010 Hb_008206_100--Hb_175933_010 Hb_000260_790 Hb_000260_790 Hb_008206_100--Hb_000260_790 Hb_008642_030 Hb_008642_030 Hb_008206_100--Hb_008642_030 Hb_001208_040--Hb_001208_030 Hb_002960_130 Hb_002960_130 Hb_001208_040--Hb_002960_130 Hb_000217_020 Hb_000217_020 Hb_001208_040--Hb_000217_020 Hb_000016_060 Hb_000016_060 Hb_001208_040--Hb_000016_060 Hb_006452_110 Hb_006452_110 Hb_001208_040--Hb_006452_110 Hb_007390_020 Hb_007390_020 Hb_001208_040--Hb_007390_020 Hb_003103_010--Hb_002154_110 Hb_003103_010--Hb_008642_030 Hb_006573_290 Hb_006573_290 Hb_003103_010--Hb_006573_290 Hb_011249_020 Hb_011249_020 Hb_003103_010--Hb_011249_020 Hb_001195_070 Hb_001195_070 Hb_003103_010--Hb_001195_070 Hb_145880_020 Hb_145880_020 Hb_001208_030--Hb_145880_020 Hb_001208_030--Hb_002154_110 Hb_001208_030--Hb_008642_030 Hb_076219_010 Hb_076219_010 Hb_001208_030--Hb_076219_010 Hb_001208_030--Hb_175933_010 Hb_001584_240--Hb_002960_130 Hb_000671_130 Hb_000671_130 Hb_001584_240--Hb_000671_130 Hb_001584_240--Hb_001195_070 Hb_048476_060 Hb_048476_060 Hb_001584_240--Hb_048476_060 Hb_083380_020 Hb_083380_020 Hb_001584_240--Hb_083380_020 Hb_001584_240--Hb_001208_040 Hb_000240_120 Hb_000240_120 Hb_175933_010--Hb_000240_120 Hb_032972_010 Hb_032972_010 Hb_175933_010--Hb_032972_010 Hb_175933_010--Hb_001208_040 Hb_001969_020 Hb_001969_020 Hb_175933_010--Hb_001969_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.304571 0 0.74386 3.7672 0.303667 0.383442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61985 2.31353 0.387257 1.01556 1.28073

CAGE analysis