Hb_003996_030

Information

Type -
Description -
Location Contig3996: 15908-21473
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39798: 16094-17811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003996_030 0.0 - - -
2 Hb_001979_030 0.2765173719 - - hypothetical protein POPTR_0016s06130g [Populus trichocarpa]
3 Hb_001864_090 0.2780750719 - - -
4 Hb_004158_100 0.2792197713 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
5 Hb_000946_160 0.285571025 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
6 Hb_015941_050 0.2997001661 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001277_060 0.3004690285 - - ADP-ribosylation factor-like protein 5 [Morus notabilis]
8 Hb_001894_080 0.3047533487 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000205_200 0.3068977083 - - -
10 Hb_092233_010 0.3089327996 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
11 Hb_078804_010 0.319973783 - - kinase, putative [Ricinus communis]
12 Hb_094529_020 0.3205154748 - - leucine-rich repeat containing protein, putative [Ricinus communis]
13 Hb_004947_010 0.3213416941 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
14 Hb_000329_260 0.3227335039 - - hypothetical protein MIMGU_mgv1a016162mg [Erythranthe guttata]
15 Hb_000243_370 0.3268709894 - - hypothetical protein VITISV_010022 [Vitis vinifera]
16 Hb_009178_050 0.3318306846 - - Elongation factor 1-alpha, putative [Ricinus communis]
17 Hb_005306_120 0.3334065536 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008054_060 0.3373521608 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
19 Hb_012092_070 0.3374764696 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
20 Hb_019818_010 0.3377626118 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_003996_030 Hb_003996_030 Hb_001979_030 Hb_001979_030 Hb_003996_030--Hb_001979_030 Hb_001864_090 Hb_001864_090 Hb_003996_030--Hb_001864_090 Hb_004158_100 Hb_004158_100 Hb_003996_030--Hb_004158_100 Hb_000946_160 Hb_000946_160 Hb_003996_030--Hb_000946_160 Hb_015941_050 Hb_015941_050 Hb_003996_030--Hb_015941_050 Hb_001277_060 Hb_001277_060 Hb_003996_030--Hb_001277_060 Hb_006120_090 Hb_006120_090 Hb_001979_030--Hb_006120_090 Hb_000205_200 Hb_000205_200 Hb_001979_030--Hb_000205_200 Hb_044555_010 Hb_044555_010 Hb_001979_030--Hb_044555_010 Hb_000329_260 Hb_000329_260 Hb_001979_030--Hb_000329_260 Hb_001979_030--Hb_001864_090 Hb_001864_090--Hb_000946_160 Hb_001922_180 Hb_001922_180 Hb_001864_090--Hb_001922_180 Hb_005489_010 Hb_005489_010 Hb_001864_090--Hb_005489_010 Hb_003206_100 Hb_003206_100 Hb_001864_090--Hb_003206_100 Hb_002025_210 Hb_002025_210 Hb_001864_090--Hb_002025_210 Hb_021888_040 Hb_021888_040 Hb_001864_090--Hb_021888_040 Hb_001355_120 Hb_001355_120 Hb_004158_100--Hb_001355_120 Hb_000603_010 Hb_000603_010 Hb_004158_100--Hb_000603_010 Hb_118094_010 Hb_118094_010 Hb_004158_100--Hb_118094_010 Hb_000261_170 Hb_000261_170 Hb_004158_100--Hb_000261_170 Hb_001828_100 Hb_001828_100 Hb_004158_100--Hb_001828_100 Hb_001584_030 Hb_001584_030 Hb_004158_100--Hb_001584_030 Hb_000946_160--Hb_021888_040 Hb_000243_370 Hb_000243_370 Hb_000946_160--Hb_000243_370 Hb_000946_160--Hb_000261_170 Hb_000946_160--Hb_003206_100 Hb_002205_170 Hb_002205_170 Hb_015941_050--Hb_002205_170 Hb_005144_010 Hb_005144_010 Hb_015941_050--Hb_005144_010 Hb_001322_070 Hb_001322_070 Hb_015941_050--Hb_001322_070 Hb_001584_240 Hb_001584_240 Hb_015941_050--Hb_001584_240 Hb_008206_100 Hb_008206_100 Hb_015941_050--Hb_008206_100 Hb_000483_400 Hb_000483_400 Hb_015941_050--Hb_000483_400 Hb_009178_050 Hb_009178_050 Hb_001277_060--Hb_009178_050 Hb_078804_010 Hb_078804_010 Hb_001277_060--Hb_078804_010 Hb_000614_310 Hb_000614_310 Hb_001277_060--Hb_000614_310 Hb_001248_120 Hb_001248_120 Hb_001277_060--Hb_001248_120 Hb_033153_080 Hb_033153_080 Hb_001277_060--Hb_033153_080 Hb_001514_260 Hb_001514_260 Hb_001277_060--Hb_001514_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.09093 0 0 35.484 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.86868 18.7915 0 2.50838 1.92899

CAGE analysis