Hb_000174_010

Information

Type -
Description -
Location Contig174: 30197-33466
Sequence    

Annotation

kegg
ID mdm:103444904
description uncharacterized LOC103444904
nr
ID XP_008382085.1
description PREDICTED: uncharacterized protein LOC103444904 [Malus domestica]
swissprot
ID C4B7M5
description Disease resistance protein RRS1 OS=Arabidopsis thaliana GN=RRS1 PE=2 SV=1
trembl
ID A0A067JIU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26633 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_010 0.0 - - PREDICTED: uncharacterized protein LOC103444904 [Malus domestica]
2 Hb_006120_090 0.2780172274 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
3 Hb_001979_030 0.3012955228 - - hypothetical protein POPTR_0016s06130g [Populus trichocarpa]
4 Hb_078804_010 0.3415935551 - - kinase, putative [Ricinus communis]
5 Hb_001864_090 0.3465608023 - - -
6 Hb_056559_010 0.3485755058 - - PREDICTED: uncharacterized protein LOC104088595 [Nicotiana tomentosiformis]
7 Hb_000445_170 0.3619786387 - - PREDICTED: probable methyltransferase PMT10 [Jatropha curcas]
8 Hb_000089_200 0.3664105663 - - hypothetical protein VITISV_019292 [Vitis vinifera]
9 Hb_002759_090 0.3719699639 - - -
10 Hb_000373_190 0.3726574517 - - -
11 Hb_011485_090 0.3729504007 - - -
12 Hb_000707_040 0.3848091343 - - Uncharacterized protein TCM_021829 [Theobroma cacao]
13 Hb_000069_740 0.386678175 - - Esterase precursor, putative [Ricinus communis]
14 Hb_000108_100 0.3886775266 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X2 [Jatropha curcas]
15 Hb_000032_050 0.3897543804 - - hypothetical protein RCOM_1691130 [Ricinus communis]
16 Hb_000329_260 0.3900133677 - - hypothetical protein MIMGU_mgv1a016162mg [Erythranthe guttata]
17 Hb_033870_010 0.3921003808 - - PREDICTED: uncharacterized protein LOC104101109 isoform X1 [Nicotiana tomentosiformis]
18 Hb_171276_010 0.3938255488 - - -
19 Hb_001449_030 0.3955286718 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Jatropha curcas]
20 Hb_002073_010 0.3975236544 - - -

Gene co-expression network

sample Hb_000174_010 Hb_000174_010 Hb_006120_090 Hb_006120_090 Hb_000174_010--Hb_006120_090 Hb_001979_030 Hb_001979_030 Hb_000174_010--Hb_001979_030 Hb_078804_010 Hb_078804_010 Hb_000174_010--Hb_078804_010 Hb_001864_090 Hb_001864_090 Hb_000174_010--Hb_001864_090 Hb_056559_010 Hb_056559_010 Hb_000174_010--Hb_056559_010 Hb_000445_170 Hb_000445_170 Hb_000174_010--Hb_000445_170 Hb_006120_090--Hb_001979_030 Hb_044555_010 Hb_044555_010 Hb_006120_090--Hb_044555_010 Hb_003502_100 Hb_003502_100 Hb_006120_090--Hb_003502_100 Hb_001288_030 Hb_001288_030 Hb_006120_090--Hb_001288_030 Hb_004128_040 Hb_004128_040 Hb_006120_090--Hb_004128_040 Hb_000205_200 Hb_000205_200 Hb_001979_030--Hb_000205_200 Hb_001979_030--Hb_044555_010 Hb_003996_030 Hb_003996_030 Hb_001979_030--Hb_003996_030 Hb_000329_260 Hb_000329_260 Hb_001979_030--Hb_000329_260 Hb_001979_030--Hb_001864_090 Hb_001277_060 Hb_001277_060 Hb_078804_010--Hb_001277_060 Hb_009178_050 Hb_009178_050 Hb_078804_010--Hb_009178_050 Hb_001633_190 Hb_001633_190 Hb_078804_010--Hb_001633_190 Hb_000614_310 Hb_000614_310 Hb_078804_010--Hb_000614_310 Hb_078804_010--Hb_001864_090 Hb_000946_160 Hb_000946_160 Hb_078804_010--Hb_000946_160 Hb_001864_090--Hb_000946_160 Hb_001922_180 Hb_001922_180 Hb_001864_090--Hb_001922_180 Hb_005489_010 Hb_005489_010 Hb_001864_090--Hb_005489_010 Hb_003206_100 Hb_003206_100 Hb_001864_090--Hb_003206_100 Hb_002025_210 Hb_002025_210 Hb_001864_090--Hb_002025_210 Hb_021888_040 Hb_021888_040 Hb_001864_090--Hb_021888_040 Hb_007101_010 Hb_007101_010 Hb_056559_010--Hb_007101_010 Hb_033870_010 Hb_033870_010 Hb_056559_010--Hb_033870_010 Hb_056559_010--Hb_000329_260 Hb_113733_010 Hb_113733_010 Hb_056559_010--Hb_113733_010 Hb_000035_280 Hb_000035_280 Hb_056559_010--Hb_000035_280 Hb_000069_740 Hb_000069_740 Hb_000445_170--Hb_000069_740 Hb_002228_100 Hb_002228_100 Hb_000445_170--Hb_002228_100 Hb_000137_070 Hb_000137_070 Hb_000445_170--Hb_000137_070 Hb_000733_080 Hb_000733_080 Hb_000445_170--Hb_000733_080 Hb_006452_110 Hb_006452_110 Hb_000445_170--Hb_006452_110 Hb_012340_050 Hb_012340_050 Hb_000445_170--Hb_012340_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0606906 0 0 0.217021 0.0775148 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.123689 0.0486325 0 0.0785668 0

CAGE analysis