Hb_001205_160

Information

Type -
Description -
Location Contig1205: 113149-114087
Sequence    

Annotation

kegg
ID pop:POPTR_0005s12560g
description hypothetical protein
nr
ID XP_006383213.1
description hypothetical protein POPTR_0005s12560g [Populus trichocarpa]
swissprot
ID F4IQJ6
description Protein LIKE COV 3 OS=Arabidopsis thaliana GN=LCV3 PE=2 SV=1
trembl
ID U5GC41
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12560g PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein like-cov 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_160 0.0 - - hypothetical protein POPTR_0005s12560g [Populus trichocarpa]
2 Hb_001163_040 0.1600655275 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
3 Hb_000733_080 0.1694065121 - - PREDICTED: uncharacterized protein LOC105646960 [Jatropha curcas]
4 Hb_000215_200 0.1779392092 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
5 Hb_002284_050 0.1805034308 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
6 Hb_000671_120 0.1806864558 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
7 Hb_004669_030 0.1922164962 - - -
8 Hb_006452_110 0.1974669784 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
9 Hb_000445_170 0.201577584 - - PREDICTED: probable methyltransferase PMT10 [Jatropha curcas]
10 Hb_080601_020 0.2068574019 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
11 Hb_001233_020 0.2070996342 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
12 Hb_001220_010 0.207675391 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
13 Hb_000069_740 0.2115989633 - - Esterase precursor, putative [Ricinus communis]
14 Hb_001969_020 0.211631947 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
15 Hb_001922_180 0.2120507553 - - hevamine-A precursor, putative [Ricinus communis]
16 Hb_000641_020 0.2129750378 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
17 Hb_132180_010 0.2148750782 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
18 Hb_000710_070 0.2185273434 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
19 Hb_000340_520 0.2215070072 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
20 Hb_029142_070 0.2224057344 - - -

Gene co-expression network

sample Hb_001205_160 Hb_001205_160 Hb_001163_040 Hb_001163_040 Hb_001205_160--Hb_001163_040 Hb_000733_080 Hb_000733_080 Hb_001205_160--Hb_000733_080 Hb_000215_200 Hb_000215_200 Hb_001205_160--Hb_000215_200 Hb_002284_050 Hb_002284_050 Hb_001205_160--Hb_002284_050 Hb_000671_120 Hb_000671_120 Hb_001205_160--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_001205_160--Hb_004669_030 Hb_011512_050 Hb_011512_050 Hb_001163_040--Hb_011512_050 Hb_002078_260 Hb_002078_260 Hb_001163_040--Hb_002078_260 Hb_001220_010 Hb_001220_010 Hb_001163_040--Hb_001220_010 Hb_006452_110 Hb_006452_110 Hb_001163_040--Hb_006452_110 Hb_007894_230 Hb_007894_230 Hb_001163_040--Hb_007894_230 Hb_080601_020 Hb_080601_020 Hb_001163_040--Hb_080601_020 Hb_001252_210 Hb_001252_210 Hb_000733_080--Hb_001252_210 Hb_000733_080--Hb_006452_110 Hb_019762_020 Hb_019762_020 Hb_000733_080--Hb_019762_020 Hb_000023_290 Hb_000023_290 Hb_000733_080--Hb_000023_290 Hb_003894_080 Hb_003894_080 Hb_000733_080--Hb_003894_080 Hb_003929_270 Hb_003929_270 Hb_000733_080--Hb_003929_270 Hb_041205_010 Hb_041205_010 Hb_000215_200--Hb_041205_010 Hb_000215_200--Hb_002284_050 Hb_006995_040 Hb_006995_040 Hb_000215_200--Hb_006995_040 Hb_000641_020 Hb_000641_020 Hb_000215_200--Hb_000641_020 Hb_003994_270 Hb_003994_270 Hb_000215_200--Hb_003994_270 Hb_132180_010 Hb_132180_010 Hb_000215_200--Hb_132180_010 Hb_001504_080 Hb_001504_080 Hb_002284_050--Hb_001504_080 Hb_000710_070 Hb_000710_070 Hb_002284_050--Hb_000710_070 Hb_002284_050--Hb_080601_020 Hb_002660_050 Hb_002660_050 Hb_002284_050--Hb_002660_050 Hb_172706_030 Hb_172706_030 Hb_002284_050--Hb_172706_030 Hb_000671_120--Hb_004669_030 Hb_000671_120--Hb_132180_010 Hb_000671_120--Hb_001220_010 Hb_000342_160 Hb_000342_160 Hb_000671_120--Hb_000342_160 Hb_001233_020 Hb_001233_020 Hb_000671_120--Hb_001233_020 Hb_011037_020 Hb_011037_020 Hb_000671_120--Hb_011037_020 Hb_000635_070 Hb_000635_070 Hb_004669_030--Hb_000635_070 Hb_004669_030--Hb_001233_020 Hb_004669_030--Hb_132180_010 Hb_004669_030--Hb_001220_010 Hb_002562_110 Hb_002562_110 Hb_004669_030--Hb_002562_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14325 0 0.0616059 1.53826 0.228498 0.475716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.93983 0.517087 0.390278 0.0906298 0.144032

CAGE analysis