Hb_003777_170

Information

Type -
Description -
Location Contig3777: 250303-251523
Sequence    

Annotation

kegg
ID rcu:RCOM_0959210
description hypothetical protein
nr
ID XP_002524292.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A2XCJ1
description UPF0496 protein 3 OS=Oryza sativa subsp. indica GN=OsI_009784 PE=3 SV=2
trembl
ID B9SE73
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0959210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000166_060 0.1653479031 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007120_040 0.1956483182 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011472_010 0.2511749723 - - PREDICTED: protein yippee-like [Jatropha curcas]
5 Hb_001930_090 0.2600568768 - - DNA binding protein, putative [Ricinus communis]
6 Hb_002572_030 0.2628824088 - - PREDICTED: diacylglycerol kinase theta [Jatropha curcas]
7 Hb_007553_010 0.2639993991 - - -
8 Hb_001635_020 0.2751586408 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
9 Hb_001504_140 0.2819442593 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
10 Hb_144484_010 0.2852081496 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_000042_220 0.2945115755 - - PREDICTED: uncharacterized protein LOC105632809 [Jatropha curcas]
12 Hb_000922_120 0.2974718671 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
13 Hb_003502_100 0.2980320681 - - -
14 Hb_000005_400 0.2988732298 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
15 Hb_092233_010 0.3022445116 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
16 Hb_006018_060 0.3039347708 - - Zinc finger SWIM domain-containing protein 7 isoform 1 [Theobroma cacao]
17 Hb_104000_010 0.3053662888 - - -
18 Hb_000896_110 0.3056617979 - - -
19 Hb_000179_120 0.3099880509 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
20 Hb_012022_130 0.3129477838 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]

Gene co-expression network

sample Hb_003777_170 Hb_003777_170 Hb_000166_060 Hb_000166_060 Hb_003777_170--Hb_000166_060 Hb_007120_040 Hb_007120_040 Hb_003777_170--Hb_007120_040 Hb_011472_010 Hb_011472_010 Hb_003777_170--Hb_011472_010 Hb_001930_090 Hb_001930_090 Hb_003777_170--Hb_001930_090 Hb_002572_030 Hb_002572_030 Hb_003777_170--Hb_002572_030 Hb_007553_010 Hb_007553_010 Hb_003777_170--Hb_007553_010 Hb_006018_060 Hb_006018_060 Hb_000166_060--Hb_006018_060 Hb_185224_010 Hb_185224_010 Hb_000166_060--Hb_185224_010 Hb_001504_140 Hb_001504_140 Hb_000166_060--Hb_001504_140 Hb_000042_220 Hb_000042_220 Hb_000166_060--Hb_000042_220 Hb_000166_060--Hb_011472_010 Hb_007120_040--Hb_011472_010 Hb_000922_120 Hb_000922_120 Hb_007120_040--Hb_000922_120 Hb_000179_120 Hb_000179_120 Hb_007120_040--Hb_000179_120 Hb_023301_010 Hb_023301_010 Hb_007120_040--Hb_023301_010 Hb_012022_130 Hb_012022_130 Hb_007120_040--Hb_012022_130 Hb_012163_020 Hb_012163_020 Hb_011472_010--Hb_012163_020 Hb_000732_210 Hb_000732_210 Hb_011472_010--Hb_000732_210 Hb_007943_190 Hb_007943_190 Hb_011472_010--Hb_007943_190 Hb_001377_420 Hb_001377_420 Hb_011472_010--Hb_001377_420 Hb_011472_010--Hb_000922_120 Hb_011472_010--Hb_001504_140 Hb_104000_010 Hb_104000_010 Hb_001930_090--Hb_104000_010 Hb_144484_010 Hb_144484_010 Hb_001930_090--Hb_144484_010 Hb_011909_110 Hb_011909_110 Hb_001930_090--Hb_011909_110 Hb_024154_020 Hb_024154_020 Hb_001930_090--Hb_024154_020 Hb_173281_010 Hb_173281_010 Hb_001930_090--Hb_173281_010 Hb_002572_030--Hb_000179_120 Hb_002157_040 Hb_002157_040 Hb_002572_030--Hb_002157_040 Hb_001486_270 Hb_001486_270 Hb_002572_030--Hb_001486_270 Hb_124996_010 Hb_124996_010 Hb_002572_030--Hb_124996_010 Hb_000032_050 Hb_000032_050 Hb_002572_030--Hb_000032_050 Hb_000005_400 Hb_000005_400 Hb_007553_010--Hb_000005_400 Hb_005245_070 Hb_005245_070 Hb_007553_010--Hb_005245_070 Hb_162275_020 Hb_162275_020 Hb_007553_010--Hb_162275_020 Hb_003502_100 Hb_003502_100 Hb_007553_010--Hb_003502_100 Hb_000049_050 Hb_000049_050 Hb_007553_010--Hb_000049_050 Hb_000260_790 Hb_000260_790 Hb_007553_010--Hb_000260_790
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0156017 0.25516 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.225819 0.106572 0.131531 0.0712782 0

CAGE analysis