Hb_007120_040

Information

Type -
Description -
Location Contig7120: 25977-27110
Sequence    

Annotation

kegg
ID rcu:RCOM_0606730
description hypothetical protein
nr
ID XP_002530969.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O80630
description Dirigent protein 9 OS=Arabidopsis thaliana GN=DIR9 PE=2 SV=1
trembl
ID B9SYA0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0606730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007120_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003777_170 0.1956483182 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011472_010 0.2526028115 - - PREDICTED: protein yippee-like [Jatropha curcas]
4 Hb_000922_120 0.2669477723 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
5 Hb_000179_120 0.2675233457 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
6 Hb_023301_010 0.2785179726 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
7 Hb_012022_130 0.2811025291 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
8 Hb_000217_010 0.2855441154 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
9 Hb_009178_050 0.2869387409 - - Elongation factor 1-alpha, putative [Ricinus communis]
10 Hb_092233_010 0.2963087745 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
11 Hb_144484_010 0.3097541006 - - calcineurin-like phosphoesterase [Manihot esculenta]
12 Hb_025075_010 0.3107029786 - - 50S ribosomal protein L24 [Glycine soja]
13 Hb_001208_010 0.3135028422 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
14 Hb_000042_220 0.3163191032 - - PREDICTED: uncharacterized protein LOC105632809 [Jatropha curcas]
15 Hb_001141_290 0.3195936647 - - -
16 Hb_000192_020 0.3235949724 - - hypothetical protein JCGZ_17351 [Jatropha curcas]
17 Hb_000166_060 0.3255483096 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005021_010 0.3256764042 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
19 Hb_001930_090 0.3296375209 - - DNA binding protein, putative [Ricinus communis]
20 Hb_067793_010 0.3317090977 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_007120_040 Hb_007120_040 Hb_003777_170 Hb_003777_170 Hb_007120_040--Hb_003777_170 Hb_011472_010 Hb_011472_010 Hb_007120_040--Hb_011472_010 Hb_000922_120 Hb_000922_120 Hb_007120_040--Hb_000922_120 Hb_000179_120 Hb_000179_120 Hb_007120_040--Hb_000179_120 Hb_023301_010 Hb_023301_010 Hb_007120_040--Hb_023301_010 Hb_012022_130 Hb_012022_130 Hb_007120_040--Hb_012022_130 Hb_000166_060 Hb_000166_060 Hb_003777_170--Hb_000166_060 Hb_003777_170--Hb_011472_010 Hb_001930_090 Hb_001930_090 Hb_003777_170--Hb_001930_090 Hb_002572_030 Hb_002572_030 Hb_003777_170--Hb_002572_030 Hb_007553_010 Hb_007553_010 Hb_003777_170--Hb_007553_010 Hb_012163_020 Hb_012163_020 Hb_011472_010--Hb_012163_020 Hb_000732_210 Hb_000732_210 Hb_011472_010--Hb_000732_210 Hb_007943_190 Hb_007943_190 Hb_011472_010--Hb_007943_190 Hb_001377_420 Hb_001377_420 Hb_011472_010--Hb_001377_420 Hb_011472_010--Hb_000922_120 Hb_001504_140 Hb_001504_140 Hb_011472_010--Hb_001504_140 Hb_000922_120--Hb_012022_130 Hb_000922_120--Hb_023301_010 Hb_001454_100 Hb_001454_100 Hb_000922_120--Hb_001454_100 Hb_144484_010 Hb_144484_010 Hb_000922_120--Hb_144484_010 Hb_001712_040 Hb_001712_040 Hb_000922_120--Hb_001712_040 Hb_000217_010 Hb_000217_010 Hb_000179_120--Hb_000217_010 Hb_034299_070 Hb_034299_070 Hb_000179_120--Hb_034299_070 Hb_000345_060 Hb_000345_060 Hb_000179_120--Hb_000345_060 Hb_000483_400 Hb_000483_400 Hb_000179_120--Hb_000483_400 Hb_000179_120--Hb_002572_030 Hb_000179_120--Hb_023301_010 Hb_023301_010--Hb_012022_130 Hb_000210_100 Hb_000210_100 Hb_023301_010--Hb_000210_100 Hb_023301_010--Hb_001454_100 Hb_023301_010--Hb_000217_010 Hb_012022_130--Hb_144484_010 Hb_012022_130--Hb_001712_040 Hb_012022_130--Hb_001504_140 Hb_000138_170 Hb_000138_170 Hb_012022_130--Hb_000138_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.12318 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0434284 0.03416 0.0633556 0.0136991 0

CAGE analysis