Hb_019863_100

Information

Type -
Description -
Location Contig19863: 164033-168318
Sequence    

Annotation

kegg
ID rcu:RCOM_1230590
description alanine-glyoxylate aminotransferase, putative (EC:2.6.1.44)
nr
ID XP_012089723.1
description PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9SR86
description Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1
trembl
ID A0A067JG37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00384 PE=3 SV=1
Gene Ontology
ID GO:0008453
description alanine--glyoxylate aminotransferase 2 homolog mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19941: 164248-168145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019863_100 0.0 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Jatropha curcas]
2 Hb_000210_100 0.215071916 - - pepsin A, putative [Ricinus communis]
3 Hb_004162_060 0.2224195779 - - unnamed protein product [Vitis vinifera]
4 Hb_000258_060 0.2226835414 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004204_110 0.2277038693 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
6 Hb_002316_010 0.2362864851 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
7 Hb_000164_010 0.2494457676 - - small heat-shock protein, putative [Ricinus communis]
8 Hb_001635_010 0.2501650694 - - -
9 Hb_029920_020 0.2559120983 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
10 Hb_034299_070 0.2624631128 - - actin binding protein, putative [Ricinus communis]
11 Hb_002659_030 0.2663412719 - - copper transport protein atox1, putative [Ricinus communis]
12 Hb_001289_020 0.2685749 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
13 Hb_001989_100 0.2688830606 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
14 Hb_003878_050 0.2717853086 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
15 Hb_000260_280 0.2768323064 - - auxin:hydrogen symporter, putative [Ricinus communis]
16 Hb_001310_090 0.2788769411 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
17 Hb_001454_100 0.2797791718 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
18 Hb_012090_030 0.2804416535 - - PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
19 Hb_000028_500 0.2842408756 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_069355_010 0.2844771271 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]

Gene co-expression network

sample Hb_019863_100 Hb_019863_100 Hb_000210_100 Hb_000210_100 Hb_019863_100--Hb_000210_100 Hb_004162_060 Hb_004162_060 Hb_019863_100--Hb_004162_060 Hb_000258_060 Hb_000258_060 Hb_019863_100--Hb_000258_060 Hb_004204_110 Hb_004204_110 Hb_019863_100--Hb_004204_110 Hb_002316_010 Hb_002316_010 Hb_019863_100--Hb_002316_010 Hb_000164_010 Hb_000164_010 Hb_019863_100--Hb_000164_010 Hb_001454_100 Hb_001454_100 Hb_000210_100--Hb_001454_100 Hb_025466_020 Hb_025466_020 Hb_000210_100--Hb_025466_020 Hb_069355_010 Hb_069355_010 Hb_000210_100--Hb_069355_010 Hb_000260_280 Hb_000260_280 Hb_000210_100--Hb_000260_280 Hb_003878_050 Hb_003878_050 Hb_000210_100--Hb_003878_050 Hb_020805_140 Hb_020805_140 Hb_000210_100--Hb_020805_140 Hb_004162_060--Hb_069355_010 Hb_001481_130 Hb_001481_130 Hb_004162_060--Hb_001481_130 Hb_001898_140 Hb_001898_140 Hb_004162_060--Hb_001898_140 Hb_004162_060--Hb_003878_050 Hb_126757_010 Hb_126757_010 Hb_004162_060--Hb_126757_010 Hb_004162_060--Hb_000210_100 Hb_001635_010 Hb_001635_010 Hb_000258_060--Hb_001635_010 Hb_008695_220 Hb_008695_220 Hb_000258_060--Hb_008695_220 Hb_003894_020 Hb_003894_020 Hb_000258_060--Hb_003894_020 Hb_001989_100 Hb_001989_100 Hb_000258_060--Hb_001989_100 Hb_000796_020 Hb_000796_020 Hb_000258_060--Hb_000796_020 Hb_004429_080 Hb_004429_080 Hb_004204_110--Hb_004429_080 Hb_004204_110--Hb_003878_050 Hb_000086_290 Hb_000086_290 Hb_004204_110--Hb_000086_290 Hb_004204_110--Hb_000210_100 Hb_001902_200 Hb_001902_200 Hb_004204_110--Hb_001902_200 Hb_006711_090 Hb_006711_090 Hb_004204_110--Hb_006711_090 Hb_002316_010--Hb_001635_010 Hb_012565_010 Hb_012565_010 Hb_002316_010--Hb_012565_010 Hb_133279_010 Hb_133279_010 Hb_002316_010--Hb_133279_010 Hb_002193_070 Hb_002193_070 Hb_002316_010--Hb_002193_070 Hb_000157_050 Hb_000157_050 Hb_002316_010--Hb_000157_050 Hb_004109_210 Hb_004109_210 Hb_000164_010--Hb_004109_210 Hb_003875_010 Hb_003875_010 Hb_000164_010--Hb_003875_010 Hb_104571_010 Hb_104571_010 Hb_000164_010--Hb_104571_010 Hb_002026_050 Hb_002026_050 Hb_000164_010--Hb_002026_050 Hb_000020_100 Hb_000020_100 Hb_000164_010--Hb_000020_100 Hb_122940_010 Hb_122940_010 Hb_000164_010--Hb_122940_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.871529 7.53562 5.31954 67.7762 0.102399 0.0812307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.32352 9.27636 29.3217 1.07548 12.0629

CAGE analysis