Hb_000574_300

Information

Type -
Description -
Location Contig574: 295335-309819
Sequence    

Annotation

kegg
ID rcu:RCOM_0901450
description receptor-kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_002517677.1
description receptor-kinase, putative [Ricinus communis]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9RVA8
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0901450 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49556: 309679-322135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_300 0.0 - - receptor-kinase, putative [Ricinus communis]
2 Hb_133279_010 0.1981609438 - - spermidine synthase 1, putative [Ricinus communis]
3 Hb_002893_030 0.2003276546 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
4 Hb_006153_160 0.2070985579 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X4 [Jatropha curcas]
5 Hb_005548_060 0.2080462676 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003159_150 0.2108967486 - - PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Jatropha curcas]
7 Hb_103942_030 0.2169402322 - - protein with unknown function [Ricinus communis]
8 Hb_010381_100 0.2205117237 - - Phospholipase D epsilon [Morus notabilis]
9 Hb_000011_310 0.2218254478 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
10 Hb_000328_010 0.225111947 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
11 Hb_000086_090 0.2298334464 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
12 Hb_012395_110 0.2309981743 - - PREDICTED: peroxygenase [Jatropha curcas]
13 Hb_188281_010 0.2310877613 - - carboxylic ester hydrolase, putative [Ricinus communis]
14 Hb_000193_340 0.2314939821 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
15 Hb_001102_160 0.2316627416 - - PREDICTED: galacturonokinase [Jatropha curcas]
16 Hb_002498_030 0.2330498955 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000544_190 0.2343061181 - - ARF GTPase activator, putative [Ricinus communis]
18 Hb_004007_070 0.2377731948 - - adenylsulfate kinase, putative [Ricinus communis]
19 Hb_001105_120 0.238903188 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
20 Hb_008725_080 0.2397824046 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_300 Hb_000574_300 Hb_133279_010 Hb_133279_010 Hb_000574_300--Hb_133279_010 Hb_002893_030 Hb_002893_030 Hb_000574_300--Hb_002893_030 Hb_006153_160 Hb_006153_160 Hb_000574_300--Hb_006153_160 Hb_005548_060 Hb_005548_060 Hb_000574_300--Hb_005548_060 Hb_003159_150 Hb_003159_150 Hb_000574_300--Hb_003159_150 Hb_103942_030 Hb_103942_030 Hb_000574_300--Hb_103942_030 Hb_012090_030 Hb_012090_030 Hb_133279_010--Hb_012090_030 Hb_000389_040 Hb_000389_040 Hb_133279_010--Hb_000389_040 Hb_002498_030 Hb_002498_030 Hb_133279_010--Hb_002498_030 Hb_001105_120 Hb_001105_120 Hb_133279_010--Hb_001105_120 Hb_000011_310 Hb_000011_310 Hb_133279_010--Hb_000011_310 Hb_004007_070 Hb_004007_070 Hb_002893_030--Hb_004007_070 Hb_000365_280 Hb_000365_280 Hb_002893_030--Hb_000365_280 Hb_188281_010 Hb_188281_010 Hb_002893_030--Hb_188281_010 Hb_002893_030--Hb_103942_030 Hb_012395_110 Hb_012395_110 Hb_002893_030--Hb_012395_110 Hb_002026_050 Hb_002026_050 Hb_002893_030--Hb_002026_050 Hb_000193_340 Hb_000193_340 Hb_006153_160--Hb_000193_340 Hb_002759_220 Hb_002759_220 Hb_006153_160--Hb_002759_220 Hb_000328_010 Hb_000328_010 Hb_006153_160--Hb_000328_010 Hb_006153_160--Hb_012395_110 Hb_001433_150 Hb_001433_150 Hb_006153_160--Hb_001433_150 Hb_007101_260 Hb_007101_260 Hb_006153_160--Hb_007101_260 Hb_000023_110 Hb_000023_110 Hb_005548_060--Hb_000023_110 Hb_000049_270 Hb_000049_270 Hb_005548_060--Hb_000049_270 Hb_005568_020 Hb_005568_020 Hb_005548_060--Hb_005568_020 Hb_000735_060 Hb_000735_060 Hb_005548_060--Hb_000735_060 Hb_005548_060--Hb_000193_340 Hb_005548_060--Hb_001433_150 Hb_001123_250 Hb_001123_250 Hb_003159_150--Hb_001123_250 Hb_003159_150--Hb_002893_030 Hb_003159_150--Hb_000365_280 Hb_003159_150--Hb_004007_070 Hb_000371_120 Hb_000371_120 Hb_003159_150--Hb_000371_120 Hb_000086_090 Hb_000086_090 Hb_003159_150--Hb_000086_090 Hb_010883_180 Hb_010883_180 Hb_103942_030--Hb_010883_180 Hb_000260_110 Hb_000260_110 Hb_103942_030--Hb_000260_110 Hb_103942_030--Hb_000389_040 Hb_103942_030--Hb_004007_070 Hb_103942_030--Hb_000086_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00843866 0.0197081 0.0428428 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00726729 0 0.0110276 0.00226226 0.0123088

CAGE analysis