Hb_005548_060

Information

Type -
Description -
Location Contig5548: 66096-66557
Sequence    

Annotation

kegg
ID rcu:RCOM_0327650
description hypothetical protein
nr
ID XP_002530241.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SW72
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0327650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005548_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000023_110 0.1438670892 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
3 Hb_000049_270 0.1674933164 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
4 Hb_005568_020 0.1840788569 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
5 Hb_000735_060 0.1850036714 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
6 Hb_000193_340 0.1852543927 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
7 Hb_001433_150 0.1887874231 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006736_050 0.1892099411 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
9 Hb_010381_100 0.1896072846 - - Phospholipase D epsilon [Morus notabilis]
10 Hb_001102_160 0.1914213134 - - PREDICTED: galacturonokinase [Jatropha curcas]
11 Hb_012807_150 0.1922555066 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
12 Hb_002028_110 0.192876509 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
13 Hb_002184_080 0.1941058978 - - triacylglycerol lipase, putative [Ricinus communis]
14 Hb_003606_050 0.1945546678 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
15 Hb_006889_030 0.1948123203 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
16 Hb_000465_020 0.1956304077 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
17 Hb_091318_010 0.1957435065 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
18 Hb_012395_110 0.196291169 - - PREDICTED: peroxygenase [Jatropha curcas]
19 Hb_000008_200 0.1973808793 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
20 Hb_006570_090 0.197595692 - - tubulin beta chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_005548_060 Hb_005548_060 Hb_000023_110 Hb_000023_110 Hb_005548_060--Hb_000023_110 Hb_000049_270 Hb_000049_270 Hb_005548_060--Hb_000049_270 Hb_005568_020 Hb_005568_020 Hb_005548_060--Hb_005568_020 Hb_000735_060 Hb_000735_060 Hb_005548_060--Hb_000735_060 Hb_000193_340 Hb_000193_340 Hb_005548_060--Hb_000193_340 Hb_001433_150 Hb_001433_150 Hb_005548_060--Hb_001433_150 Hb_000023_110--Hb_000049_270 Hb_003408_010 Hb_003408_010 Hb_000023_110--Hb_003408_010 Hb_000327_360 Hb_000327_360 Hb_000023_110--Hb_000327_360 Hb_012807_150 Hb_012807_150 Hb_000023_110--Hb_012807_150 Hb_003606_050 Hb_003606_050 Hb_000023_110--Hb_003606_050 Hb_031284_030 Hb_031284_030 Hb_000023_110--Hb_031284_030 Hb_006570_090 Hb_006570_090 Hb_000049_270--Hb_006570_090 Hb_004007_070 Hb_004007_070 Hb_000049_270--Hb_004007_070 Hb_000098_170 Hb_000098_170 Hb_000049_270--Hb_000098_170 Hb_000049_270--Hb_012807_150 Hb_006889_030 Hb_006889_030 Hb_000049_270--Hb_006889_030 Hb_005568_020--Hb_000735_060 Hb_002078_390 Hb_002078_390 Hb_005568_020--Hb_002078_390 Hb_005568_020--Hb_003606_050 Hb_000008_200 Hb_000008_200 Hb_005568_020--Hb_000008_200 Hb_128196_010 Hb_128196_010 Hb_005568_020--Hb_128196_010 Hb_000207_350 Hb_000207_350 Hb_005568_020--Hb_000207_350 Hb_000735_060--Hb_003606_050 Hb_022092_110 Hb_022092_110 Hb_000735_060--Hb_022092_110 Hb_001936_180 Hb_001936_180 Hb_000735_060--Hb_001936_180 Hb_000418_170 Hb_000418_170 Hb_000735_060--Hb_000418_170 Hb_000735_060--Hb_000008_200 Hb_006153_160 Hb_006153_160 Hb_000193_340--Hb_006153_160 Hb_007101_260 Hb_007101_260 Hb_000193_340--Hb_007101_260 Hb_161396_010 Hb_161396_010 Hb_000193_340--Hb_161396_010 Hb_002759_220 Hb_002759_220 Hb_000193_340--Hb_002759_220 Hb_000808_150 Hb_000808_150 Hb_000193_340--Hb_000808_150 Hb_000328_010 Hb_000328_010 Hb_000193_340--Hb_000328_010 Hb_001180_010 Hb_001180_010 Hb_001433_150--Hb_001180_010 Hb_002028_110 Hb_002028_110 Hb_001433_150--Hb_002028_110 Hb_001153_100 Hb_001153_100 Hb_001433_150--Hb_001153_100 Hb_002641_120 Hb_002641_120 Hb_001433_150--Hb_002641_120 Hb_001544_050 Hb_001544_050 Hb_001433_150--Hb_001544_050 Hb_001433_150--Hb_002759_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.453229 1.40602 2.14881 0.0658381 0.138639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.306638 0 0.200489 0.353387 0.883659

CAGE analysis