Hb_015778_030

Information

Type -
Description -
Location Contig15778: 59039-59782
Sequence    

Annotation

kegg
ID tcc:TCM_012373
description hypothetical protein
nr
ID XP_012093057.1
description PREDICTED: probable myosin light chain kinase DDB_G0279831 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JKY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05908 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13792: 58654-58796 , PASA_asmbl_13793: 58949-59257 , PASA_asmbl_13794: 59277-59688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015778_030 0.0 - - PREDICTED: probable myosin light chain kinase DDB_G0279831 [Jatropha curcas]
2 Hb_023827_020 0.175175755 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
3 Hb_000849_060 0.2012702739 - - putative sodium-dependent transporter yocS [Morus notabilis]
4 Hb_000336_230 0.2035325039 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa007609mg [Prunus persica]
5 Hb_006922_090 0.2137519765 - - PREDICTED: interaptin [Jatropha curcas]
6 Hb_018117_020 0.2149578659 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
7 Hb_000381_110 0.2169166063 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X2 [Jatropha curcas]
8 Hb_012807_130 0.2209258546 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
9 Hb_100147_010 0.2233043701 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
10 Hb_003305_020 0.2281172135 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
11 Hb_000824_050 0.2288405423 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
12 Hb_000382_020 0.2294887598 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
13 Hb_009898_040 0.2328160355 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009193_100 0.2329374251 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
15 Hb_000345_250 0.2337902608 - - cullin 1-like protein [Hevea brasiliensis]
16 Hb_028487_170 0.235501679 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
17 Hb_029385_010 0.2358496522 - - CTP synthase family protein [Populus trichocarpa]
18 Hb_126757_010 0.2361360681 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_004899_310 0.2376208572 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000700_040 0.238993158 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]

Gene co-expression network

sample Hb_015778_030 Hb_015778_030 Hb_023827_020 Hb_023827_020 Hb_015778_030--Hb_023827_020 Hb_000849_060 Hb_000849_060 Hb_015778_030--Hb_000849_060 Hb_000336_230 Hb_000336_230 Hb_015778_030--Hb_000336_230 Hb_006922_090 Hb_006922_090 Hb_015778_030--Hb_006922_090 Hb_018117_020 Hb_018117_020 Hb_015778_030--Hb_018117_020 Hb_000381_110 Hb_000381_110 Hb_015778_030--Hb_000381_110 Hb_023827_020--Hb_000381_110 Hb_100147_010 Hb_100147_010 Hb_023827_020--Hb_100147_010 Hb_001673_100 Hb_001673_100 Hb_023827_020--Hb_001673_100 Hb_000824_050 Hb_000824_050 Hb_023827_020--Hb_000824_050 Hb_005914_140 Hb_005914_140 Hb_023827_020--Hb_005914_140 Hb_003044_080 Hb_003044_080 Hb_023827_020--Hb_003044_080 Hb_000849_060--Hb_018117_020 Hb_000679_190 Hb_000679_190 Hb_000849_060--Hb_000679_190 Hb_000586_030 Hb_000586_030 Hb_000849_060--Hb_000586_030 Hb_044486_030 Hb_044486_030 Hb_000849_060--Hb_044486_030 Hb_000849_060--Hb_023827_020 Hb_007590_090 Hb_007590_090 Hb_000336_230--Hb_007590_090 Hb_140459_010 Hb_140459_010 Hb_000336_230--Hb_140459_010 Hb_132840_070 Hb_132840_070 Hb_000336_230--Hb_132840_070 Hb_004007_110 Hb_004007_110 Hb_000336_230--Hb_004007_110 Hb_024468_010 Hb_024468_010 Hb_000336_230--Hb_024468_010 Hb_069696_010 Hb_069696_010 Hb_000336_230--Hb_069696_010 Hb_001366_060 Hb_001366_060 Hb_006922_090--Hb_001366_060 Hb_006922_090--Hb_000824_050 Hb_012362_030 Hb_012362_030 Hb_006922_090--Hb_012362_030 Hb_000120_230 Hb_000120_230 Hb_006922_090--Hb_000120_230 Hb_029510_100 Hb_029510_100 Hb_006922_090--Hb_029510_100 Hb_019280_020 Hb_019280_020 Hb_006922_090--Hb_019280_020 Hb_018117_020--Hb_000679_190 Hb_000240_100 Hb_000240_100 Hb_018117_020--Hb_000240_100 Hb_038564_010 Hb_038564_010 Hb_018117_020--Hb_038564_010 Hb_005694_020 Hb_005694_020 Hb_018117_020--Hb_005694_020 Hb_001971_060 Hb_001971_060 Hb_000381_110--Hb_001971_060 Hb_000381_110--Hb_100147_010 Hb_000025_190 Hb_000025_190 Hb_000381_110--Hb_000025_190 Hb_000251_030 Hb_000251_030 Hb_000381_110--Hb_000251_030 Hb_001221_020 Hb_001221_020 Hb_000381_110--Hb_001221_020 Hb_002631_010 Hb_002631_010 Hb_000381_110--Hb_002631_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0968186 7.05216 1.28637 22.3358 0.0605616 1.81622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.457 7.6624 12.187 16.3322 5.94234

CAGE analysis