Hb_044486_030

Information

Type -
Description -
Location Contig44486: 29843-31241
Sequence    

Annotation

kegg
ID -
description -
nr
ID ADV78054.1
description DMI1, partial [Cycas revoluta]
swissprot
ID -
description -
trembl
ID E8ZA44
description DMI1 (Fragment) OS=Cycas revoluta GN=DMI1 PE=2 SV=1
Gene Ontology
ID GO:0006812
description ion channel castor-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42798: 15380-45555 , PASA_asmbl_42800: 15800-33308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044486_030 0.0 - - DMI1, partial [Cycas revoluta]
2 Hb_009674_010 0.1410205377 - - AAEL007687-PA [Aedes aegypti]
3 Hb_166053_010 0.144698793 - - glyceraldehyde-3-phosphate dehydrogenase, partial [Vernicia fordii]
4 Hb_004881_030 0.16404033 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
5 Hb_091349_010 0.1653218625 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
6 Hb_010042_020 0.1696195981 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
7 Hb_033152_070 0.1714715327 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
8 Hb_000107_110 0.1717236049 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000928_190 0.1723831092 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
10 Hb_001894_070 0.1728933562 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
11 Hb_001006_270 0.1747118932 - - peptide transporter, putative [Ricinus communis]
12 Hb_000586_030 0.1770918176 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
13 Hb_099116_010 0.1796714174 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010577_010 0.184160653 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
15 Hb_012707_010 0.1882902574 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
16 Hb_009711_050 0.1884556612 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
17 Hb_003780_020 0.1894677999 - - PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X2 [Glycine max]
18 Hb_148130_020 0.1900305577 - - -
19 Hb_000684_310 0.1900363641 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
20 Hb_003052_030 0.1917500073 - - 6-phosphogluconate dehydrogenase family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_044486_030 Hb_044486_030 Hb_009674_010 Hb_009674_010 Hb_044486_030--Hb_009674_010 Hb_166053_010 Hb_166053_010 Hb_044486_030--Hb_166053_010 Hb_004881_030 Hb_004881_030 Hb_044486_030--Hb_004881_030 Hb_091349_010 Hb_091349_010 Hb_044486_030--Hb_091349_010 Hb_010042_020 Hb_010042_020 Hb_044486_030--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_044486_030--Hb_033152_070 Hb_001216_110 Hb_001216_110 Hb_009674_010--Hb_001216_110 Hb_000684_310 Hb_000684_310 Hb_009674_010--Hb_000684_310 Hb_002129_020 Hb_002129_020 Hb_009674_010--Hb_002129_020 Hb_000679_040 Hb_000679_040 Hb_009674_010--Hb_000679_040 Hb_001195_090 Hb_001195_090 Hb_009674_010--Hb_001195_090 Hb_028639_030 Hb_028639_030 Hb_009674_010--Hb_028639_030 Hb_001006_270 Hb_001006_270 Hb_166053_010--Hb_001006_270 Hb_166053_010--Hb_010042_020 Hb_000928_190 Hb_000928_190 Hb_166053_010--Hb_000928_190 Hb_148130_020 Hb_148130_020 Hb_166053_010--Hb_148130_020 Hb_000003_310 Hb_000003_310 Hb_166053_010--Hb_000003_310 Hb_001104_130 Hb_001104_130 Hb_004881_030--Hb_001104_130 Hb_000107_110 Hb_000107_110 Hb_004881_030--Hb_000107_110 Hb_002603_050 Hb_002603_050 Hb_004881_030--Hb_002603_050 Hb_003052_180 Hb_003052_180 Hb_004881_030--Hb_003052_180 Hb_004881_030--Hb_033152_070 Hb_004881_030--Hb_000928_190 Hb_000671_130 Hb_000671_130 Hb_091349_010--Hb_000671_130 Hb_010577_010 Hb_010577_010 Hb_091349_010--Hb_010577_010 Hb_091349_010--Hb_000107_110 Hb_001894_070 Hb_001894_070 Hb_091349_010--Hb_001894_070 Hb_091349_010--Hb_033152_070 Hb_091349_010--Hb_004881_030 Hb_010042_020--Hb_033152_070 Hb_003207_020 Hb_003207_020 Hb_010042_020--Hb_003207_020 Hb_010042_020--Hb_000928_190 Hb_001486_040 Hb_001486_040 Hb_010042_020--Hb_001486_040 Hb_004525_040 Hb_004525_040 Hb_010042_020--Hb_004525_040 Hb_010042_020--Hb_000107_110 Hb_033152_070--Hb_003207_020 Hb_033152_070--Hb_000928_190 Hb_033152_070--Hb_004525_040 Hb_033152_070--Hb_003052_180 Hb_000402_130 Hb_000402_130 Hb_033152_070--Hb_000402_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175231 0.566348 0.237768 5.32833 0.599624 1.25646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.508662 0.959423 0.838379 2.39424 2.47362

CAGE analysis