Hb_166053_010

Information

Type -
Description -
Location Contig166053: 4101-4928
Sequence    

Annotation

kegg
ID cit:102624117
description glyceraldehyde-3-phosphate dehydrogenase-like
nr
ID AFJ04516.1
description glyceraldehyde-3-phosphate dehydrogenase, partial [Vernicia fordii]
swissprot
ID P26520
description Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1
trembl
ID J3RY33
description Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Vernicia fordii GN=GAPDH PE=2 SV=1
Gene Ontology
ID GO:0016620
description glyceraldehyde-3-phosphate cytosolic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 015_D06.ab1: 3840-4928

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166053_010 0.0 - - glyceraldehyde-3-phosphate dehydrogenase, partial [Vernicia fordii]
2 Hb_001006_270 0.1195432976 - - peptide transporter, putative [Ricinus communis]
3 Hb_010042_020 0.1261236867 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
4 Hb_000928_190 0.1408752646 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
5 Hb_148130_020 0.1445140995 - - -
6 Hb_044486_030 0.144698793 - - DMI1, partial [Cycas revoluta]
7 Hb_000003_310 0.1471389035 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
8 Hb_004525_040 0.147777855 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
9 Hb_033152_070 0.1481931165 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
10 Hb_000824_050 0.150805329 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
11 Hb_003052_030 0.1516004782 - - 6-phosphogluconate dehydrogenase family protein isoform 1 [Theobroma cacao]
12 Hb_001481_150 0.1527015144 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
13 Hb_002928_200 0.1562267563 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
14 Hb_009674_010 0.1566586594 - - AAEL007687-PA [Aedes aegypti]
15 Hb_004094_020 0.1566750265 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
16 Hb_004881_030 0.1634711278 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
17 Hb_001946_310 0.1641833019 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
18 Hb_135757_020 0.1649369911 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
19 Hb_000254_070 0.165501804 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
20 Hb_000035_330 0.1686489648 - - Transmembrane protein 85 [Theobroma cacao]

Gene co-expression network

sample Hb_166053_010 Hb_166053_010 Hb_001006_270 Hb_001006_270 Hb_166053_010--Hb_001006_270 Hb_010042_020 Hb_010042_020 Hb_166053_010--Hb_010042_020 Hb_000928_190 Hb_000928_190 Hb_166053_010--Hb_000928_190 Hb_148130_020 Hb_148130_020 Hb_166053_010--Hb_148130_020 Hb_044486_030 Hb_044486_030 Hb_166053_010--Hb_044486_030 Hb_000003_310 Hb_000003_310 Hb_166053_010--Hb_000003_310 Hb_001006_270--Hb_000928_190 Hb_001481_150 Hb_001481_150 Hb_001006_270--Hb_001481_150 Hb_000035_330 Hb_000035_330 Hb_001006_270--Hb_000035_330 Hb_000237_050 Hb_000237_050 Hb_001006_270--Hb_000237_050 Hb_004094_020 Hb_004094_020 Hb_001006_270--Hb_004094_020 Hb_000701_030 Hb_000701_030 Hb_001006_270--Hb_000701_030 Hb_033152_070 Hb_033152_070 Hb_010042_020--Hb_033152_070 Hb_003207_020 Hb_003207_020 Hb_010042_020--Hb_003207_020 Hb_010042_020--Hb_000928_190 Hb_001486_040 Hb_001486_040 Hb_010042_020--Hb_001486_040 Hb_004525_040 Hb_004525_040 Hb_010042_020--Hb_004525_040 Hb_000107_110 Hb_000107_110 Hb_010042_020--Hb_000107_110 Hb_000928_190--Hb_033152_070 Hb_000258_240 Hb_000258_240 Hb_000928_190--Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000928_190--Hb_002781_030 Hb_000928_190--Hb_001481_150 Hb_003988_050 Hb_003988_050 Hb_000928_190--Hb_003988_050 Hb_148130_020--Hb_002781_030 Hb_148130_020--Hb_010042_020 Hb_148130_020--Hb_033152_070 Hb_148130_020--Hb_000928_190 Hb_148130_020--Hb_000258_240 Hb_000008_190 Hb_000008_190 Hb_148130_020--Hb_000008_190 Hb_009674_010 Hb_009674_010 Hb_044486_030--Hb_009674_010 Hb_004881_030 Hb_004881_030 Hb_044486_030--Hb_004881_030 Hb_091349_010 Hb_091349_010 Hb_044486_030--Hb_091349_010 Hb_044486_030--Hb_010042_020 Hb_044486_030--Hb_033152_070 Hb_000254_070 Hb_000254_070 Hb_000003_310--Hb_000254_070 Hb_000003_310--Hb_000701_030 Hb_021576_070 Hb_021576_070 Hb_000003_310--Hb_021576_070 Hb_000684_310 Hb_000684_310 Hb_000003_310--Hb_000684_310 Hb_000679_040 Hb_000679_040 Hb_000003_310--Hb_000679_040 Hb_000418_020 Hb_000418_020 Hb_000003_310--Hb_000418_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.296 155.174 126.828 1055.8 117.222 212.48
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
244.081 131.008 87.8344 611.193 382.926

CAGE analysis