Hb_001416_170

Information

Type -
Description -
Location Contig1416: 276857-277956
Sequence    

Annotation

kegg
ID rcu:RCOM_0818920
description kinase, putative (EC:2.7.11.21)
nr
ID XP_002518350.1
description kinase, putative [Ricinus communis]
swissprot
ID P22970
description Anti-H(O) lectin 1 OS=Cytisophyllum sessilifolius PE=1 SV=2
trembl
ID B9RX81
description Kinase, putative OS=Ricinus communis GN=RCOM_0818920 PE=3 SV=1
Gene Ontology
ID GO:0030246
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001416_170 0.0 - - kinase, putative [Ricinus communis]
2 Hb_000853_010 0.05835253 - - Pectinesterase-3 precursor, putative [Ricinus communis]
3 Hb_006834_010 0.078479781 - - conserved hypothetical protein [Ricinus communis]
4 Hb_055147_020 0.0932461483 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
5 Hb_000975_130 0.12316504 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
6 Hb_004984_020 0.1274947359 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
7 Hb_055440_010 0.1394883624 - - protein binding protein, putative [Ricinus communis]
8 Hb_003768_110 0.1480679749 - - hypothetical protein POPTR_0004s12230g [Populus trichocarpa]
9 Hb_003811_050 0.1559537377 - - hypothetical protein JCGZ_01310 [Jatropha curcas]
10 Hb_002580_020 0.1565883683 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
11 Hb_004096_010 0.1572364738 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
12 Hb_001002_090 0.1582443816 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
13 Hb_146901_020 0.160008425 - - -
14 Hb_000676_130 0.1604530459 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
15 Hb_000993_020 0.1615521747 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
16 Hb_002437_010 0.1624436854 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
17 Hb_005672_030 0.162593017 - - PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
18 Hb_000956_060 0.1631254802 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
19 Hb_015934_100 0.164867914 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
20 Hb_072997_010 0.1652879835 - - hypothetical protein JCGZ_18743 [Jatropha curcas]

Gene co-expression network

sample Hb_001416_170 Hb_001416_170 Hb_000853_010 Hb_000853_010 Hb_001416_170--Hb_000853_010 Hb_006834_010 Hb_006834_010 Hb_001416_170--Hb_006834_010 Hb_055147_020 Hb_055147_020 Hb_001416_170--Hb_055147_020 Hb_000975_130 Hb_000975_130 Hb_001416_170--Hb_000975_130 Hb_004984_020 Hb_004984_020 Hb_001416_170--Hb_004984_020 Hb_055440_010 Hb_055440_010 Hb_001416_170--Hb_055440_010 Hb_000853_010--Hb_006834_010 Hb_003811_050 Hb_003811_050 Hb_000853_010--Hb_003811_050 Hb_000853_010--Hb_000975_130 Hb_002580_020 Hb_002580_020 Hb_000853_010--Hb_002580_020 Hb_000853_010--Hb_004984_020 Hb_006834_010--Hb_004984_020 Hb_006834_010--Hb_002580_020 Hb_006834_010--Hb_055440_010 Hb_001002_090 Hb_001002_090 Hb_006834_010--Hb_001002_090 Hb_000172_310 Hb_000172_310 Hb_055147_020--Hb_000172_310 Hb_055147_020--Hb_000975_130 Hb_004218_220 Hb_004218_220 Hb_055147_020--Hb_004218_220 Hb_096878_010 Hb_096878_010 Hb_055147_020--Hb_096878_010 Hb_000111_120 Hb_000111_120 Hb_055147_020--Hb_000111_120 Hb_000956_060 Hb_000956_060 Hb_000975_130--Hb_000956_060 Hb_000975_130--Hb_003811_050 Hb_005672_030 Hb_005672_030 Hb_000975_130--Hb_005672_030 Hb_000676_130 Hb_000676_130 Hb_000975_130--Hb_000676_130 Hb_004631_030 Hb_004631_030 Hb_000975_130--Hb_004631_030 Hb_004984_020--Hb_055440_010 Hb_004984_020--Hb_002580_020 Hb_005144_080 Hb_005144_080 Hb_004984_020--Hb_005144_080 Hb_055440_010--Hb_001002_090 Hb_072997_010 Hb_072997_010 Hb_055440_010--Hb_072997_010 Hb_004096_010 Hb_004096_010 Hb_055440_010--Hb_004096_010 Hb_000979_080 Hb_000979_080 Hb_055440_010--Hb_000979_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0617311 0.194005 0.3276 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.243895 0

CAGE analysis