Hb_005408_050

Information

Type -
Description -
Location Contig5408: 64370-68731
Sequence    

Annotation

kegg
ID rcu:RCOM_0376600
description kinase, putative (EC:2.7.11.25)
nr
ID XP_012089695.1
description PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
swissprot
ID Q9SCU5
description Probable serine/threonine-protein kinase WNK5 OS=Arabidopsis thaliana GN=WNK5 PE=1 SV=2
trembl
ID A0A067JG21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00364 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable serine threonine-protein kinase wnk5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47860: 64396-68744
cDNA
(Sanger)
(ID:Location)		 033_L14.ab1: 64398-65128

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005408_050 0.0 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
2 Hb_001387_030 0.1642038431 transcription factor TF Family: ERF hypothetical protein POPTR_0013s13920g [Populus trichocarpa]
3 Hb_004846_160 0.1885803024 - - -
4 Hb_055101_010 0.2376736547 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000077_060 0.2460682536 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
6 Hb_000226_080 0.2509641262 - - prephenate dehydrogenase, putative [Ricinus communis]
7 Hb_075807_010 0.2626268932 - - PREDICTED: uncharacterized protein LOC105631775 [Jatropha curcas]
8 Hb_000990_060 0.2642586143 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
9 Hb_000239_020 0.2695529948 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
10 Hb_001619_040 0.2734761027 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
11 Hb_025708_020 0.2752852562 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_026048_020 0.2786498693 - - PREDICTED: uncharacterized protein LOC105645738 [Jatropha curcas]
13 Hb_006153_080 0.2788743395 - - flavin-containing monooxygenase-related family protein [Populus trichocarpa]
14 Hb_004846_150 0.2804483029 - - hypothetical protein JCGZ_26968 [Jatropha curcas]
15 Hb_000700_080 0.2854614463 - - conserved hypothetical protein [Ricinus communis]
16 Hb_020301_030 0.287886432 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_007262_030 0.296305842 - - -
18 Hb_052689_010 0.2964258654 - - heat shock cognate protein [Solanum commersonii]
19 Hb_005048_020 0.2966168947 - - Retrotransposon protein, putative [Theobroma cacao]
20 Hb_004200_020 0.2998589661 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]

Gene co-expression network

sample Hb_005408_050 Hb_005408_050 Hb_001387_030 Hb_001387_030 Hb_005408_050--Hb_001387_030 Hb_004846_160 Hb_004846_160 Hb_005408_050--Hb_004846_160 Hb_055101_010 Hb_055101_010 Hb_005408_050--Hb_055101_010 Hb_000077_060 Hb_000077_060 Hb_005408_050--Hb_000077_060 Hb_000226_080 Hb_000226_080 Hb_005408_050--Hb_000226_080 Hb_075807_010 Hb_075807_010 Hb_005408_050--Hb_075807_010 Hb_001387_030--Hb_075807_010 Hb_001387_030--Hb_055101_010 Hb_004200_020 Hb_004200_020 Hb_001387_030--Hb_004200_020 Hb_000990_060 Hb_000990_060 Hb_001387_030--Hb_000990_060 Hb_115791_020 Hb_115791_020 Hb_001387_030--Hb_115791_020 Hb_004846_160--Hb_000226_080 Hb_000239_020 Hb_000239_020 Hb_004846_160--Hb_000239_020 Hb_052689_010 Hb_052689_010 Hb_004846_160--Hb_052689_010 Hb_024404_020 Hb_024404_020 Hb_004846_160--Hb_024404_020 Hb_004374_120 Hb_004374_120 Hb_004846_160--Hb_004374_120 Hb_004785_140 Hb_004785_140 Hb_055101_010--Hb_004785_140 Hb_055101_010--Hb_000990_060 Hb_002205_190 Hb_002205_190 Hb_055101_010--Hb_002205_190 Hb_080952_010 Hb_080952_010 Hb_055101_010--Hb_080952_010 Hb_000362_120 Hb_000362_120 Hb_055101_010--Hb_000362_120 Hb_002496_040 Hb_002496_040 Hb_055101_010--Hb_002496_040 Hb_006153_080 Hb_006153_080 Hb_000077_060--Hb_006153_080 Hb_008760_010 Hb_008760_010 Hb_000077_060--Hb_008760_010 Hb_007747_180 Hb_007747_180 Hb_000077_060--Hb_007747_180 Hb_004020_060 Hb_004020_060 Hb_000077_060--Hb_004020_060 Hb_002046_070 Hb_002046_070 Hb_000077_060--Hb_002046_070 Hb_004993_060 Hb_004993_060 Hb_000226_080--Hb_004993_060 Hb_000226_080--Hb_024404_020 Hb_000270_120 Hb_000270_120 Hb_000226_080--Hb_000270_120 Hb_000549_040 Hb_000549_040 Hb_000226_080--Hb_000549_040 Hb_001619_040 Hb_001619_040 Hb_000226_080--Hb_001619_040 Hb_000226_080--Hb_000239_020 Hb_020301_030 Hb_020301_030 Hb_075807_010--Hb_020301_030 Hb_025557_030 Hb_025557_030 Hb_075807_010--Hb_025557_030 Hb_027393_030 Hb_027393_030 Hb_075807_010--Hb_027393_030 Hb_002007_190 Hb_002007_190 Hb_075807_010--Hb_002007_190 Hb_001189_050 Hb_001189_050 Hb_075807_010--Hb_001189_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.47584 34.5851 3.73262 13.8214 0.427337 0.600679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.90741 5.76171 72.8498 10.4292 22.8927

CAGE analysis