Hb_000094_240

Information

Type -
Description -
Location Contig94: 192583-195445
Sequence    

Annotation

kegg
ID rcu:RCOM_1593980
description hypothetical protein
nr
ID XP_012071826.1
description PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FCX0
description PERQ amino acid-rich with GYF domain-containing protein 2, putative isoform 3 OS=Theobroma cacao GN=TCM_034020 PE=4 SV=1
Gene Ontology
ID GO:0009737
description perq amino acid-rich with gyf domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63108: 192995-194255
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_240 0.0 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
2 Hb_163206_010 0.2272813146 - - hypothetical protein JCGZ_01203 [Jatropha curcas]
3 Hb_000012_040 0.2535445583 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
4 Hb_000926_100 0.2929774844 - - hypothetical protein B456_007G076800 [Gossypium raimondii]
5 Hb_000085_390 0.2992764653 - - unnamed protein product [Vitis vinifera]
6 Hb_000143_020 0.3130267867 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
7 Hb_007672_030 0.3239984479 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
8 Hb_003050_030 0.3252713618 - - Calcyclin-binding protein, putative [Ricinus communis]
9 Hb_000222_030 0.3267155111 - - -
10 Hb_006655_040 0.3355168067 - - tau class glutathione transferase GSTU15 [Populus trichocarpa]
11 Hb_001623_090 0.3433818085 - - PREDICTED: probable serine incorporator [Jatropha curcas]
12 Hb_014720_090 0.3470635745 - - -
13 Hb_003680_210 0.3475003869 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
14 Hb_001691_220 0.3475996607 - - PREDICTED: uncharacterized protein LOC105649537 [Jatropha curcas]
15 Hb_000086_670 0.3485712234 - - PREDICTED: probable DNA helicase MCM9 [Jatropha curcas]
16 Hb_021576_020 0.3506151254 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
17 Hb_000450_160 0.3517964882 - - hypothetical protein JCGZ_16746 [Jatropha curcas]
18 Hb_029921_030 0.3557647209 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002998_070 0.3574548469 - - hypothetical protein CARUB_v10019139mg, partial [Capsella rubella]
20 Hb_007125_010 0.3595684293 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]

Gene co-expression network

sample Hb_000094_240 Hb_000094_240 Hb_163206_010 Hb_163206_010 Hb_000094_240--Hb_163206_010 Hb_000012_040 Hb_000012_040 Hb_000094_240--Hb_000012_040 Hb_000926_100 Hb_000926_100 Hb_000094_240--Hb_000926_100 Hb_000085_390 Hb_000085_390 Hb_000094_240--Hb_000085_390 Hb_000143_020 Hb_000143_020 Hb_000094_240--Hb_000143_020 Hb_007672_030 Hb_007672_030 Hb_000094_240--Hb_007672_030 Hb_007157_030 Hb_007157_030 Hb_163206_010--Hb_007157_030 Hb_000450_160 Hb_000450_160 Hb_163206_010--Hb_000450_160 Hb_163206_010--Hb_000926_100 Hb_000117_100 Hb_000117_100 Hb_163206_010--Hb_000117_100 Hb_002998_070 Hb_002998_070 Hb_163206_010--Hb_002998_070 Hb_000140_190 Hb_000140_190 Hb_000012_040--Hb_000140_190 Hb_002057_010 Hb_002057_010 Hb_000012_040--Hb_002057_010 Hb_001691_030 Hb_001691_030 Hb_000012_040--Hb_001691_030 Hb_001691_220 Hb_001691_220 Hb_000012_040--Hb_001691_220 Hb_000012_040--Hb_000143_020 Hb_000926_100--Hb_000450_160 Hb_001623_090 Hb_001623_090 Hb_000926_100--Hb_001623_090 Hb_003972_060 Hb_003972_060 Hb_000926_100--Hb_003972_060 Hb_029921_030 Hb_029921_030 Hb_000926_100--Hb_029921_030 Hb_000926_100--Hb_002998_070 Hb_003680_210 Hb_003680_210 Hb_000926_100--Hb_003680_210 Hb_000125_220 Hb_000125_220 Hb_000085_390--Hb_000125_220 Hb_098785_010 Hb_098785_010 Hb_000085_390--Hb_098785_010 Hb_000086_670 Hb_000086_670 Hb_000085_390--Hb_000086_670 Hb_000302_210 Hb_000302_210 Hb_000085_390--Hb_000302_210 Hb_012754_020 Hb_012754_020 Hb_000085_390--Hb_012754_020 Hb_010931_020 Hb_010931_020 Hb_000143_020--Hb_010931_020 Hb_026650_010 Hb_026650_010 Hb_000143_020--Hb_026650_010 Hb_032621_010 Hb_032621_010 Hb_000143_020--Hb_032621_010 Hb_003392_030 Hb_003392_030 Hb_000143_020--Hb_003392_030 Hb_162557_010 Hb_162557_010 Hb_000143_020--Hb_162557_010 Hb_014720_090 Hb_014720_090 Hb_007672_030--Hb_014720_090 Hb_007672_030--Hb_002998_070 Hb_000732_210 Hb_000732_210 Hb_007672_030--Hb_000732_210 Hb_021576_020 Hb_021576_020 Hb_007672_030--Hb_021576_020 Hb_000042_220 Hb_000042_220 Hb_007672_030--Hb_000042_220 Hb_011472_010 Hb_011472_010 Hb_007672_030--Hb_011472_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.104678 0.0634661 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0618822 0.110664 0.176098 0

CAGE analysis