Hb_001005_210

Information

Type -
Description -
Location Contig1005: 230903-233279
Sequence    

Annotation

kegg
ID tcc:TCM_017370
description Chalcone and stilbene synthase family protein
nr
ID XP_012067379.1
description PREDICTED: chalcone synthase 3 [Jatropha curcas]
swissprot
ID P51075
description Chalcone synthase OS=Betula pendula GN=CHS PE=2 SV=2
trembl
ID A0A067L095
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26889 PE=3 SV=1
Gene Ontology
ID GO:0005634
description chalcone synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00349: 230916-233046
cDNA
(Sanger)
(ID:Location)		 037_P17.ab1: 231801-233048 , 038_J06.ab1: 231702-233046 , 048_N04.ab1: 231808-233046

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_210 0.0 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
2 Hb_000075_030 0.0590733124 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
3 Hb_032631_080 0.0713460098 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
4 Hb_001004_130 0.1054245583 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
5 Hb_000484_040 0.1081689918 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
6 Hb_000844_090 0.1123117721 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
7 Hb_001691_060 0.1141102627 - - lipoxygenase, putative [Ricinus communis]
8 Hb_000566_110 0.1203085283 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
9 Hb_002218_040 0.1213828957 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001279_220 0.1300499769 - - protein binding protein, putative [Ricinus communis]
11 Hb_004881_080 0.1318026179 - - PREDICTED: glycerol-3-phosphate acyltransferase 1 [Populus euphratica]
12 Hb_001922_010 0.1328119814 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
13 Hb_001454_300 0.1329344319 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_007101_210 0.1342547206 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_000215_420 0.1393385589 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
16 Hb_028927_010 0.1403024285 - - leucine-rich repeat protein, putative [Ricinus communis]
17 Hb_004586_110 0.1438323582 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
18 Hb_000684_490 0.1466587353 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
19 Hb_006573_250 0.1474651724 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
20 Hb_116469_010 0.1514334987 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]

Gene co-expression network

sample Hb_001005_210 Hb_001005_210 Hb_000075_030 Hb_000075_030 Hb_001005_210--Hb_000075_030 Hb_032631_080 Hb_032631_080 Hb_001005_210--Hb_032631_080 Hb_001004_130 Hb_001004_130 Hb_001005_210--Hb_001004_130 Hb_000484_040 Hb_000484_040 Hb_001005_210--Hb_000484_040 Hb_000844_090 Hb_000844_090 Hb_001005_210--Hb_000844_090 Hb_001691_060 Hb_001691_060 Hb_001005_210--Hb_001691_060 Hb_000075_030--Hb_032631_080 Hb_000075_030--Hb_001691_060 Hb_002218_040 Hb_002218_040 Hb_000075_030--Hb_002218_040 Hb_000917_330 Hb_000917_330 Hb_000075_030--Hb_000917_330 Hb_001922_010 Hb_001922_010 Hb_000075_030--Hb_001922_010 Hb_032631_080--Hb_001922_010 Hb_032631_080--Hb_001691_060 Hb_109673_010 Hb_109673_010 Hb_032631_080--Hb_109673_010 Hb_004881_080 Hb_004881_080 Hb_032631_080--Hb_004881_080 Hb_001004_130--Hb_000844_090 Hb_008376_020 Hb_008376_020 Hb_001004_130--Hb_008376_020 Hb_006573_250 Hb_006573_250 Hb_001004_130--Hb_006573_250 Hb_079394_010 Hb_079394_010 Hb_001004_130--Hb_079394_010 Hb_001300_140 Hb_001300_140 Hb_001004_130--Hb_001300_140 Hb_000484_040--Hb_032631_080 Hb_000484_040--Hb_000844_090 Hb_001279_220 Hb_001279_220 Hb_000484_040--Hb_001279_220 Hb_001454_300 Hb_001454_300 Hb_000484_040--Hb_001454_300 Hb_001369_320 Hb_001369_320 Hb_000484_040--Hb_001369_320 Hb_000844_090--Hb_001300_140 Hb_011440_010 Hb_011440_010 Hb_000844_090--Hb_011440_010 Hb_005333_210 Hb_005333_210 Hb_000844_090--Hb_005333_210 Hb_004586_110 Hb_004586_110 Hb_000844_090--Hb_004586_110 Hb_011145_020 Hb_011145_020 Hb_001691_060--Hb_011145_020 Hb_000005_350 Hb_000005_350 Hb_001691_060--Hb_000005_350 Hb_001691_060--Hb_000917_330 Hb_001691_060--Hb_001922_010 Hb_000589_100 Hb_000589_100 Hb_001691_060--Hb_000589_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 27.8326 244.577 95.8537 0.0201491 0.0104414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.367025 0.115511 0.47363 869.961 135.264

CAGE analysis