Hb_032568_010

Information

Type -
Description -
Location Contig32568: 12307-17681
Sequence    

Annotation

kegg
ID rcu:RCOM_1049690
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012076882.1
description PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]
swissprot
ID P49597
description Protein phosphatase 2C 56 OS=Arabidopsis thaliana GN=ABI1 PE=1 SV=2
trembl
ID A0A067KC67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07377 PE=3 SV=1
Gene Ontology
ID GO:0004722
description protein phosphatase 2c 56-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34290: 15124-15721 , PASA_asmbl_34292: 15807-16516 , PASA_asmbl_34293: 14458-17645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032568_010 0.0 - - PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]
2 Hb_002890_300 0.1155811382 - - abhydrolase domain containing, putative [Ricinus communis]
3 Hb_002391_320 0.126283124 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
4 Hb_005488_130 0.1385900045 - - transporter, putative [Ricinus communis]
5 Hb_007101_260 0.1467297619 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
6 Hb_000753_110 0.1468791289 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
7 Hb_000116_020 0.1476945292 - - PREDICTED: serine acetyltransferase 2-like isoform X1 [Jatropha curcas]
8 Hb_000327_200 0.149132283 - - glutathione-s-transferase omega, putative [Ricinus communis]
9 Hb_002641_120 0.1510847092 - - PREDICTED: calmodulin [Jatropha curcas]
10 Hb_004052_100 0.1524381881 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
11 Hb_006153_150 0.1526498772 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
12 Hb_008179_030 0.1528224604 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 8 [Jatropha curcas]
13 Hb_000011_560 0.1553821616 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
14 Hb_000032_510 0.1601628952 - - PREDICTED: SUN domain-containing protein 2 [Jatropha curcas]
15 Hb_000069_360 0.1605710573 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006153_160 0.1633116254 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X4 [Jatropha curcas]
17 Hb_002016_140 0.1633830132 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
18 Hb_001408_170 0.165828097 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
19 Hb_000193_340 0.1673384369 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
20 Hb_091318_010 0.1695726246 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]

Gene co-expression network

sample Hb_032568_010 Hb_032568_010 Hb_002890_300 Hb_002890_300 Hb_032568_010--Hb_002890_300 Hb_002391_320 Hb_002391_320 Hb_032568_010--Hb_002391_320 Hb_005488_130 Hb_005488_130 Hb_032568_010--Hb_005488_130 Hb_007101_260 Hb_007101_260 Hb_032568_010--Hb_007101_260 Hb_000753_110 Hb_000753_110 Hb_032568_010--Hb_000753_110 Hb_000116_020 Hb_000116_020 Hb_032568_010--Hb_000116_020 Hb_008179_030 Hb_008179_030 Hb_002890_300--Hb_008179_030 Hb_000011_560 Hb_000011_560 Hb_002890_300--Hb_000011_560 Hb_002890_300--Hb_000116_020 Hb_006153_150 Hb_006153_150 Hb_002890_300--Hb_006153_150 Hb_000483_100 Hb_000483_100 Hb_002890_300--Hb_000483_100 Hb_000115_360 Hb_000115_360 Hb_002391_320--Hb_000115_360 Hb_002016_140 Hb_002016_140 Hb_002391_320--Hb_002016_140 Hb_012762_040 Hb_012762_040 Hb_002391_320--Hb_012762_040 Hb_002391_320--Hb_007101_260 Hb_001250_080 Hb_001250_080 Hb_002391_320--Hb_001250_080 Hb_004129_010 Hb_004129_010 Hb_002391_320--Hb_004129_010 Hb_000227_280 Hb_000227_280 Hb_005488_130--Hb_000227_280 Hb_000140_060 Hb_000140_060 Hb_005488_130--Hb_000140_060 Hb_000272_030 Hb_000272_030 Hb_005488_130--Hb_000272_030 Hb_004678_010 Hb_004678_010 Hb_005488_130--Hb_004678_010 Hb_007894_070 Hb_007894_070 Hb_005488_130--Hb_007894_070 Hb_001153_100 Hb_001153_100 Hb_005488_130--Hb_001153_100 Hb_003050_360 Hb_003050_360 Hb_007101_260--Hb_003050_360 Hb_000327_360 Hb_000327_360 Hb_007101_260--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_007101_260--Hb_161396_010 Hb_000193_340 Hb_000193_340 Hb_007101_260--Hb_000193_340 Hb_000283_140 Hb_000283_140 Hb_007101_260--Hb_000283_140 Hb_006120_060 Hb_006120_060 Hb_007101_260--Hb_006120_060 Hb_003299_020 Hb_003299_020 Hb_000753_110--Hb_003299_020 Hb_002641_120 Hb_002641_120 Hb_000753_110--Hb_002641_120 Hb_000310_060 Hb_000310_060 Hb_000753_110--Hb_000310_060 Hb_000009_420 Hb_000009_420 Hb_000753_110--Hb_000009_420 Hb_000186_030 Hb_000186_030 Hb_000753_110--Hb_000186_030 Hb_003398_040 Hb_003398_040 Hb_000753_110--Hb_003398_040 Hb_003602_060 Hb_003602_060 Hb_000116_020--Hb_003602_060 Hb_001863_070 Hb_001863_070 Hb_000116_020--Hb_001863_070 Hb_000116_020--Hb_006153_150 Hb_001329_070 Hb_001329_070 Hb_000116_020--Hb_001329_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.759684 14.2067 33.1519 27.16 0.240724 0.193197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.40714 8.86518 5.0269 4.81506 24.4813

CAGE analysis