Hb_006153_150

Information

Type -
Description -
Location Contig6153: 134967-135854
Sequence    

Annotation

kegg
ID rcu:RCOM_0250970
description hypothetical protein
nr
ID XP_012087149.1
description PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K071
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20796 PE=4 SV=1
Gene Ontology
ID GO:0003950
description PREDICTED: uncharacterized protein LOC105645999

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51199: 134749-135496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_150 0.0 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
2 Hb_000749_260 0.115715053 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
3 Hb_000390_210 0.1250682549 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_147378_010 0.1254800094 - - -
5 Hb_002701_070 0.1257283059 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
6 Hb_001544_050 0.1300295379 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
7 Hb_005784_030 0.1334102886 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
8 Hb_002272_220 0.1336489442 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001180_010 0.1381032629 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
10 Hb_004041_050 0.1399428239 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
11 Hb_002641_120 0.1409430051 - - PREDICTED: calmodulin [Jatropha curcas]
12 Hb_000465_410 0.1442173472 - - conserved hypothetical protein [Ricinus communis]
13 Hb_143004_020 0.1462343156 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
14 Hb_000684_200 0.1489533248 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
15 Hb_005237_020 0.1503443054 - - Kinesin heavy chain, putative [Ricinus communis]
16 Hb_032568_010 0.1526498772 - - PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]
17 Hb_008179_030 0.1526984904 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 8 [Jatropha curcas]
18 Hb_000116_020 0.1529439253 - - PREDICTED: serine acetyltransferase 2-like isoform X1 [Jatropha curcas]
19 Hb_000011_560 0.1534786347 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
20 Hb_004837_100 0.1554118673 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006153_150 Hb_006153_150 Hb_000749_260 Hb_000749_260 Hb_006153_150--Hb_000749_260 Hb_000390_210 Hb_000390_210 Hb_006153_150--Hb_000390_210 Hb_147378_010 Hb_147378_010 Hb_006153_150--Hb_147378_010 Hb_002701_070 Hb_002701_070 Hb_006153_150--Hb_002701_070 Hb_001544_050 Hb_001544_050 Hb_006153_150--Hb_001544_050 Hb_005784_030 Hb_005784_030 Hb_006153_150--Hb_005784_030 Hb_000749_260--Hb_000390_210 Hb_000749_260--Hb_001544_050 Hb_000749_260--Hb_147378_010 Hb_000465_410 Hb_000465_410 Hb_000749_260--Hb_000465_410 Hb_000749_260--Hb_002701_070 Hb_000352_280 Hb_000352_280 Hb_000749_260--Hb_000352_280 Hb_000390_210--Hb_001544_050 Hb_000390_210--Hb_147378_010 Hb_143004_020 Hb_143004_020 Hb_000390_210--Hb_143004_020 Hb_000061_250 Hb_000061_250 Hb_000390_210--Hb_000061_250 Hb_000322_030 Hb_000322_030 Hb_000390_210--Hb_000322_030 Hb_147378_010--Hb_001544_050 Hb_004650_050 Hb_004650_050 Hb_147378_010--Hb_004650_050 Hb_008053_030 Hb_008053_030 Hb_147378_010--Hb_008053_030 Hb_147378_010--Hb_000465_410 Hb_002701_070--Hb_000465_410 Hb_002701_070--Hb_001544_050 Hb_001180_010 Hb_001180_010 Hb_002701_070--Hb_001180_010 Hb_000958_120 Hb_000958_120 Hb_002701_070--Hb_000958_120 Hb_000996_080 Hb_000996_080 Hb_002701_070--Hb_000996_080 Hb_010868_040 Hb_010868_040 Hb_002701_070--Hb_010868_040 Hb_001544_050--Hb_001180_010 Hb_001544_050--Hb_000465_410 Hb_004994_330 Hb_004994_330 Hb_001544_050--Hb_004994_330 Hb_007904_060 Hb_007904_060 Hb_005784_030--Hb_007904_060 Hb_003664_030 Hb_003664_030 Hb_005784_030--Hb_003664_030 Hb_000264_280 Hb_000264_280 Hb_005784_030--Hb_000264_280 Hb_000684_200 Hb_000684_200 Hb_005784_030--Hb_000684_200 Hb_000270_280 Hb_000270_280 Hb_005784_030--Hb_000270_280 Hb_003948_020 Hb_003948_020 Hb_005784_030--Hb_003948_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.173432 1.67521 14.3024 8.44134 0.0996117 0.254324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35449 2.3619 1.94392 1.60675 11.2638

CAGE analysis