Hb_010883_120

Information

Type -
Description -
Location Contig10883: 109509-110285
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02667: 109792-110526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010883_120 0.0 - - -
2 Hb_004976_070 0.1901741437 - - eukaryotic translation initiation factor 2b, epsilon subunit, putative [Ricinus communis]
3 Hb_000329_340 0.2027643006 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001366_140 0.2040073254 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
5 Hb_185298_010 0.2054548874 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
6 Hb_000028_100 0.2103119308 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
7 Hb_001123_060 0.2207661532 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
8 Hb_000099_070 0.2220454472 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
9 Hb_000175_320 0.222417445 - - PREDICTED: formin-like protein 14 [Jatropha curcas]
10 Hb_001189_040 0.2224716162 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
11 Hb_001726_080 0.2252122141 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
12 Hb_000377_120 0.2314002865 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_002631_180 0.2317625805 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
14 Hb_000841_060 0.2342179194 transcription factor TF Family: ERF hypothetical protein POPTR_0015s06470g [Populus trichocarpa]
15 Hb_001386_110 0.2344147417 - - PREDICTED: LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Populus euphratica]
16 Hb_003880_040 0.2353978167 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
17 Hb_104265_040 0.2355546718 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002983_050 0.236179532 - - PREDICTED: acetylornithine aminotransferase, mitochondrial [Jatropha curcas]
19 Hb_002239_050 0.2368799527 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
20 Hb_000304_030 0.2380694647 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]

Gene co-expression network

sample Hb_010883_120 Hb_010883_120 Hb_004976_070 Hb_004976_070 Hb_010883_120--Hb_004976_070 Hb_000329_340 Hb_000329_340 Hb_010883_120--Hb_000329_340 Hb_001366_140 Hb_001366_140 Hb_010883_120--Hb_001366_140 Hb_185298_010 Hb_185298_010 Hb_010883_120--Hb_185298_010 Hb_000028_100 Hb_000028_100 Hb_010883_120--Hb_000028_100 Hb_001123_060 Hb_001123_060 Hb_010883_120--Hb_001123_060 Hb_002805_220 Hb_002805_220 Hb_004976_070--Hb_002805_220 Hb_000676_140 Hb_000676_140 Hb_004976_070--Hb_000676_140 Hb_002170_040 Hb_002170_040 Hb_004976_070--Hb_002170_040 Hb_000847_060 Hb_000847_060 Hb_004976_070--Hb_000847_060 Hb_000167_060 Hb_000167_060 Hb_004976_070--Hb_000167_060 Hb_004976_070--Hb_000028_100 Hb_000329_340--Hb_001123_060 Hb_000614_250 Hb_000614_250 Hb_000329_340--Hb_000614_250 Hb_005188_080 Hb_005188_080 Hb_000329_340--Hb_005188_080 Hb_000856_010 Hb_000856_010 Hb_000329_340--Hb_000856_010 Hb_003777_320 Hb_003777_320 Hb_000329_340--Hb_003777_320 Hb_010423_030 Hb_010423_030 Hb_000329_340--Hb_010423_030 Hb_003414_050 Hb_003414_050 Hb_001366_140--Hb_003414_050 Hb_001421_070 Hb_001421_070 Hb_001366_140--Hb_001421_070 Hb_001322_150 Hb_001322_150 Hb_001366_140--Hb_001322_150 Hb_000699_090 Hb_000699_090 Hb_001366_140--Hb_000699_090 Hb_000005_090 Hb_000005_090 Hb_001366_140--Hb_000005_090 Hb_004127_020 Hb_004127_020 Hb_001366_140--Hb_004127_020 Hb_185298_010--Hb_003414_050 Hb_000406_080 Hb_000406_080 Hb_185298_010--Hb_000406_080 Hb_181385_010 Hb_181385_010 Hb_185298_010--Hb_181385_010 Hb_000365_250 Hb_000365_250 Hb_185298_010--Hb_000365_250 Hb_002983_050 Hb_002983_050 Hb_185298_010--Hb_002983_050 Hb_000264_360 Hb_000264_360 Hb_185298_010--Hb_000264_360 Hb_003929_150 Hb_003929_150 Hb_000028_100--Hb_003929_150 Hb_000155_160 Hb_000155_160 Hb_000028_100--Hb_000155_160 Hb_002235_080 Hb_002235_080 Hb_000028_100--Hb_002235_080 Hb_003494_050 Hb_003494_050 Hb_000028_100--Hb_003494_050 Hb_000419_020 Hb_000419_020 Hb_000028_100--Hb_000419_020 Hb_000441_110 Hb_000441_110 Hb_000028_100--Hb_000441_110 Hb_001123_060--Hb_010423_030 Hb_001278_100 Hb_001278_100 Hb_001123_060--Hb_001278_100 Hb_000032_380 Hb_000032_380 Hb_001123_060--Hb_000032_380 Hb_003389_040 Hb_003389_040 Hb_001123_060--Hb_003389_040 Hb_001030_020 Hb_001030_020 Hb_001123_060--Hb_001030_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.08156 0.182233 1.28131 0.519245 0.801698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.501175 2.36293 0.605893 0.694139 0.663025

CAGE analysis