Hb_002170_040

Information

Type -
Description -
Location Contig2170: 114387-115228
Sequence    

Annotation

kegg
ID rcu:RCOM_0098840
description hypothetical protein
nr
ID XP_002533892.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6M3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0098840 PE=4 SV=1
Gene Ontology
ID GO:0044237
description 8-amino-7-oxononanoate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002170_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002585_040 0.1166284232 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
3 Hb_000530_010 0.1301085162 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Jatropha curcas]
4 Hb_038172_010 0.1305438051 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
5 Hb_000175_100 0.135104588 - - protein kinase, putative [Ricinus communis]
6 Hb_022181_030 0.1367075563 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
7 Hb_007451_010 0.1369020748 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
8 Hb_000487_210 0.1378372875 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
9 Hb_000610_050 0.1388755101 - - skp1, putative [Ricinus communis]
10 Hb_001842_100 0.1404211528 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
11 Hb_001357_150 0.1404560473 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
12 Hb_005048_130 0.1467604114 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
13 Hb_001322_040 0.148130078 - - -
14 Hb_020581_010 0.148530659 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002272_080 0.1487424697 - - -
16 Hb_004976_070 0.1490187617 - - eukaryotic translation initiation factor 2b, epsilon subunit, putative [Ricinus communis]
17 Hb_004787_110 0.1504980516 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005143_040 0.150910219 - - hypothetical protein JCGZ_17315 [Jatropha curcas]
19 Hb_005463_050 0.1510056082 - - PREDICTED: uncharacterized protein LOC105632514 [Jatropha curcas]
20 Hb_027472_040 0.1510838784 - - SKP1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002170_040 Hb_002170_040 Hb_002585_040 Hb_002585_040 Hb_002170_040--Hb_002585_040 Hb_000530_010 Hb_000530_010 Hb_002170_040--Hb_000530_010 Hb_038172_010 Hb_038172_010 Hb_002170_040--Hb_038172_010 Hb_000175_100 Hb_000175_100 Hb_002170_040--Hb_000175_100 Hb_022181_030 Hb_022181_030 Hb_002170_040--Hb_022181_030 Hb_007451_010 Hb_007451_010 Hb_002170_040--Hb_007451_010 Hb_007576_080 Hb_007576_080 Hb_002585_040--Hb_007576_080 Hb_000563_230 Hb_000563_230 Hb_002585_040--Hb_000563_230 Hb_000487_210 Hb_000487_210 Hb_002585_040--Hb_000487_210 Hb_112798_020 Hb_112798_020 Hb_002585_040--Hb_112798_020 Hb_002296_050 Hb_002296_050 Hb_002585_040--Hb_002296_050 Hb_004032_430 Hb_004032_430 Hb_002585_040--Hb_004032_430 Hb_005048_130 Hb_005048_130 Hb_000530_010--Hb_005048_130 Hb_000062_070 Hb_000062_070 Hb_000530_010--Hb_000062_070 Hb_000191_150 Hb_000191_150 Hb_000530_010--Hb_000191_150 Hb_000116_410 Hb_000116_410 Hb_000530_010--Hb_000116_410 Hb_074715_010 Hb_074715_010 Hb_000530_010--Hb_074715_010 Hb_000530_010--Hb_112798_020 Hb_001481_090 Hb_001481_090 Hb_038172_010--Hb_001481_090 Hb_003780_030 Hb_003780_030 Hb_038172_010--Hb_003780_030 Hb_038172_010--Hb_002585_040 Hb_027472_040 Hb_027472_040 Hb_038172_010--Hb_027472_040 Hb_014109_040 Hb_014109_040 Hb_038172_010--Hb_014109_040 Hb_000342_100 Hb_000342_100 Hb_038172_010--Hb_000342_100 Hb_000340_400 Hb_000340_400 Hb_000175_100--Hb_000340_400 Hb_002641_030 Hb_002641_030 Hb_000175_100--Hb_002641_030 Hb_000175_100--Hb_002585_040 Hb_008959_020 Hb_008959_020 Hb_000175_100--Hb_008959_020 Hb_005116_060 Hb_005116_060 Hb_000175_100--Hb_005116_060 Hb_001329_160 Hb_001329_160 Hb_000175_100--Hb_001329_160 Hb_001357_150 Hb_001357_150 Hb_022181_030--Hb_001357_150 Hb_022181_030--Hb_007451_010 Hb_022132_050 Hb_022132_050 Hb_022181_030--Hb_022132_050 Hb_001123_030 Hb_001123_030 Hb_022181_030--Hb_001123_030 Hb_002119_080 Hb_002119_080 Hb_022181_030--Hb_002119_080 Hb_006588_070 Hb_006588_070 Hb_022181_030--Hb_006588_070 Hb_000220_010 Hb_000220_010 Hb_007451_010--Hb_000220_010 Hb_156635_010 Hb_156635_010 Hb_007451_010--Hb_156635_010 Hb_007451_010--Hb_001357_150 Hb_002740_030 Hb_002740_030 Hb_007451_010--Hb_002740_030 Hb_001142_030 Hb_001142_030 Hb_007451_010--Hb_001142_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15417 3.10753 1.58574 3.0189 2.2767 3.63062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65765 5.41891 0.464977 3.03083 0.90175

CAGE analysis