Hb_000264_360

Information

Type -
Description -
Location Contig264: 329407-334602
Sequence    

Annotation

kegg
ID rcu:RCOM_0936640
description ubiquitin conjugating enzyme, putative (EC:6.3.2.19)
nr
ID KDP20972.1
description hypothetical protein JCGZ_21443 [Jatropha curcas]
swissprot
ID Q8VY10
description Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1
trembl
ID A0A067JB29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21443 PE=4 SV=1
Gene Ontology
ID GO:0016874
description probable ubiquitin-conjugating enzyme e2 24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27635: 329667-331325 , PASA_asmbl_27637: 333980-334200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_360 0.0 - - hypothetical protein JCGZ_21443 [Jatropha curcas]
2 Hb_000066_090 0.1464721672 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
3 Hb_000406_080 0.1524980704 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
4 Hb_000125_080 0.1536406386 transcription factor TF Family: mTERF -
5 Hb_000009_240 0.1549064599 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
6 Hb_000670_050 0.1556956481 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
7 Hb_181385_010 0.1574956938 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
8 Hb_000125_100 0.1591835758 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
9 Hb_002641_070 0.1600070547 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
10 Hb_004705_100 0.1606407389 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
11 Hb_185298_010 0.1628564316 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
12 Hb_000343_160 0.1631933399 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
13 Hb_005074_030 0.1645865204 - - -
14 Hb_000430_020 0.1647078184 - - -
15 Hb_000417_040 0.1663991079 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
16 Hb_092337_010 0.168364134 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
17 Hb_145629_010 0.1713706868 - - -
18 Hb_074715_010 0.1719727369 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
19 Hb_003414_050 0.1739330937 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
20 Hb_004473_040 0.1748385947 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000264_360 Hb_000264_360 Hb_000066_090 Hb_000066_090 Hb_000264_360--Hb_000066_090 Hb_000406_080 Hb_000406_080 Hb_000264_360--Hb_000406_080 Hb_000125_080 Hb_000125_080 Hb_000264_360--Hb_000125_080 Hb_000009_240 Hb_000009_240 Hb_000264_360--Hb_000009_240 Hb_000670_050 Hb_000670_050 Hb_000264_360--Hb_000670_050 Hb_181385_010 Hb_181385_010 Hb_000264_360--Hb_181385_010 Hb_000365_250 Hb_000365_250 Hb_000066_090--Hb_000365_250 Hb_000329_110 Hb_000329_110 Hb_000066_090--Hb_000329_110 Hb_000066_090--Hb_000406_080 Hb_000140_380 Hb_000140_380 Hb_000066_090--Hb_000140_380 Hb_007926_050 Hb_007926_050 Hb_000066_090--Hb_007926_050 Hb_000359_090 Hb_000359_090 Hb_000066_090--Hb_000359_090 Hb_000417_040 Hb_000417_040 Hb_000406_080--Hb_000417_040 Hb_000406_080--Hb_000329_110 Hb_001225_080 Hb_001225_080 Hb_000406_080--Hb_001225_080 Hb_001057_040 Hb_001057_040 Hb_000406_080--Hb_001057_040 Hb_000645_090 Hb_000645_090 Hb_000406_080--Hb_000645_090 Hb_000406_080--Hb_181385_010 Hb_092337_010 Hb_092337_010 Hb_000125_080--Hb_092337_010 Hb_003108_020 Hb_003108_020 Hb_000125_080--Hb_003108_020 Hb_000125_080--Hb_000406_080 Hb_004473_040 Hb_004473_040 Hb_000125_080--Hb_004473_040 Hb_004705_100 Hb_004705_100 Hb_000125_080--Hb_004705_100 Hb_000125_080--Hb_181385_010 Hb_000318_290 Hb_000318_290 Hb_000009_240--Hb_000318_290 Hb_002391_270 Hb_002391_270 Hb_000009_240--Hb_002391_270 Hb_005914_080 Hb_005914_080 Hb_000009_240--Hb_005914_080 Hb_004767_100 Hb_004767_100 Hb_000009_240--Hb_004767_100 Hb_003777_310 Hb_003777_310 Hb_000009_240--Hb_003777_310 Hb_003940_040 Hb_003940_040 Hb_000009_240--Hb_003940_040 Hb_000146_050 Hb_000146_050 Hb_000670_050--Hb_000146_050 Hb_000982_060 Hb_000982_060 Hb_000670_050--Hb_000982_060 Hb_000670_050--Hb_004473_040 Hb_004310_020 Hb_004310_020 Hb_000670_050--Hb_004310_020 Hb_010712_030 Hb_010712_030 Hb_000670_050--Hb_010712_030 Hb_000060_040 Hb_000060_040 Hb_000670_050--Hb_000060_040 Hb_181385_010--Hb_004473_040 Hb_002983_050 Hb_002983_050 Hb_181385_010--Hb_002983_050 Hb_181385_010--Hb_000417_040 Hb_181385_010--Hb_001057_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.85716 6.0719 0.816913 10.3299 3.92728 5.84409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.40859 7.22543 7.06717 2.09634 0.896222

CAGE analysis