Hb_001381_060

Information

Type -
Description -
Location Contig1381: 76123-77618
Sequence    

Annotation

kegg
ID rcu:RCOM_0009590
description monoxygenase, putative
nr
ID XP_002530077.1
description monoxygenase, putative [Ricinus communis]
swissprot
ID Q9FGC7
description Zeaxanthin epoxidase, chloroplastic OS=Arabidopsis thaliana GN=ZEP PE=1 SV=1
trembl
ID B9SVQ8
description Monoxygenase, putative OS=Ricinus communis GN=RCOM_0009590 PE=4 SV=1
Gene Ontology
ID GO:0016709
description zeaxanthin chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001381_060 0.0 - - monoxygenase, putative [Ricinus communis]
2 Hb_001486_200 0.1542128674 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
3 Hb_002284_080 0.159688602 - - protein with unknown function [Ricinus communis]
4 Hb_000913_080 0.1611519633 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
5 Hb_002686_160 0.1712930245 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Populus euphratica]
6 Hb_000123_220 0.1725564329 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
7 Hb_003670_030 0.1725618884 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
8 Hb_005162_140 0.1752775302 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
9 Hb_015807_030 0.1762701114 - - PREDICTED: protein NDR1-like [Jatropha curcas]
10 Hb_000735_140 0.1780696896 - - 3-glucanase family protein [Populus trichocarpa]
11 Hb_012423_060 0.1800772255 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
12 Hb_132840_160 0.1823625236 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009862_020 0.1833539298 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
14 Hb_002027_030 0.1839003474 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002349_030 0.1845053832 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000645_200 0.1848758864 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
17 Hb_003849_190 0.1863103221 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
18 Hb_000057_130 0.1869542297 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
19 Hb_007164_030 0.1876248572 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
20 Hb_001729_020 0.1879274654 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001381_060 Hb_001381_060 Hb_001486_200 Hb_001486_200 Hb_001381_060--Hb_001486_200 Hb_002284_080 Hb_002284_080 Hb_001381_060--Hb_002284_080 Hb_000913_080 Hb_000913_080 Hb_001381_060--Hb_000913_080 Hb_002686_160 Hb_002686_160 Hb_001381_060--Hb_002686_160 Hb_000123_220 Hb_000123_220 Hb_001381_060--Hb_000123_220 Hb_003670_030 Hb_003670_030 Hb_001381_060--Hb_003670_030 Hb_000059_300 Hb_000059_300 Hb_001486_200--Hb_000059_300 Hb_000110_300 Hb_000110_300 Hb_001486_200--Hb_000110_300 Hb_001049_160 Hb_001049_160 Hb_001486_200--Hb_001049_160 Hb_002876_250 Hb_002876_250 Hb_001486_200--Hb_002876_250 Hb_014720_050 Hb_014720_050 Hb_001486_200--Hb_014720_050 Hb_128589_010 Hb_128589_010 Hb_001486_200--Hb_128589_010 Hb_002000_090 Hb_002000_090 Hb_002284_080--Hb_002000_090 Hb_001433_160 Hb_001433_160 Hb_002284_080--Hb_001433_160 Hb_005054_020 Hb_005054_020 Hb_002284_080--Hb_005054_020 Hb_003710_020 Hb_003710_020 Hb_002284_080--Hb_003710_020 Hb_183086_070 Hb_183086_070 Hb_002284_080--Hb_183086_070 Hb_001353_020 Hb_001353_020 Hb_002284_080--Hb_001353_020 Hb_011618_100 Hb_011618_100 Hb_000913_080--Hb_011618_100 Hb_000913_080--Hb_001486_200 Hb_000913_080--Hb_001433_160 Hb_000913_080--Hb_014720_050 Hb_000913_080--Hb_002284_080 Hb_000589_170 Hb_000589_170 Hb_002686_160--Hb_000589_170 Hb_000757_130 Hb_000757_130 Hb_002686_160--Hb_000757_130 Hb_001729_020 Hb_001729_020 Hb_002686_160--Hb_001729_020 Hb_001377_530 Hb_001377_530 Hb_002686_160--Hb_001377_530 Hb_003894_030 Hb_003894_030 Hb_002686_160--Hb_003894_030 Hb_005305_120 Hb_005305_120 Hb_002686_160--Hb_005305_120 Hb_006120_150 Hb_006120_150 Hb_000123_220--Hb_006120_150 Hb_012340_060 Hb_012340_060 Hb_000123_220--Hb_012340_060 Hb_004680_010 Hb_004680_010 Hb_000123_220--Hb_004680_010 Hb_002042_170 Hb_002042_170 Hb_000123_220--Hb_002042_170 Hb_025708_010 Hb_025708_010 Hb_000123_220--Hb_025708_010 Hb_002027_030 Hb_002027_030 Hb_000123_220--Hb_002027_030 Hb_005064_070 Hb_005064_070 Hb_003670_030--Hb_005064_070 Hb_056196_060 Hb_056196_060 Hb_003670_030--Hb_056196_060 Hb_000056_080 Hb_000056_080 Hb_003670_030--Hb_000056_080 Hb_002325_060 Hb_002325_060 Hb_003670_030--Hb_002325_060 Hb_000375_060 Hb_000375_060 Hb_003670_030--Hb_000375_060 Hb_000000_480 Hb_000000_480 Hb_003670_030--Hb_000000_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0398918 0.156104 0.138455 0.176804 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0456194 0.0358823 0.0663968 0.0720095 0.0738311

CAGE analysis