Hb_000021_050

Information

Type -
Description -
Location Contig21: 155102-156772
Sequence    

Annotation

kegg
ID rcu:RCOM_1215380
description hypothetical protein
nr
ID XP_012086177.1
description PREDICTED: uncharacterized protein LOC105645238 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21096 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000021_050 0.0 - - PREDICTED: uncharacterized protein LOC105645238 [Jatropha curcas]
2 Hb_000304_030 0.1626875487 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
3 Hb_003835_100 0.1629707414 - - PREDICTED: putative U-box domain-containing protein 50 [Jatropha curcas]
4 Hb_001619_040 0.1653255567 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
5 Hb_000009_050 0.1735057067 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
6 Hb_012573_040 0.1740673733 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
7 Hb_004993_060 0.1747159229 - - -
8 Hb_141990_040 0.1749948377 - - Protein SCAR2, putative [Ricinus communis]
9 Hb_130016_010 0.1754268034 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000417_200 0.176051246 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
11 Hb_003327_070 0.1777804429 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
12 Hb_001604_150 0.1779595195 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Nelumbo nucifera]
13 Hb_000997_180 0.1786073031 - - conserved hypothetical protein [Ricinus communis]
14 Hb_023771_010 0.1830400355 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
15 Hb_000183_090 0.1836843181 - - PREDICTED: protein EARLY FLOWERING 3 isoform X2 [Jatropha curcas]
16 Hb_000684_040 0.1846172132 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
17 Hb_001405_070 0.1852639045 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
18 Hb_000490_060 0.1856361908 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
19 Hb_001648_030 0.1862998352 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
20 Hb_024468_010 0.1880979151 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]

Gene co-expression network

sample Hb_000021_050 Hb_000021_050 Hb_000304_030 Hb_000304_030 Hb_000021_050--Hb_000304_030 Hb_003835_100 Hb_003835_100 Hb_000021_050--Hb_003835_100 Hb_001619_040 Hb_001619_040 Hb_000021_050--Hb_001619_040 Hb_000009_050 Hb_000009_050 Hb_000021_050--Hb_000009_050 Hb_012573_040 Hb_012573_040 Hb_000021_050--Hb_012573_040 Hb_004993_060 Hb_004993_060 Hb_000021_050--Hb_004993_060 Hb_000304_030--Hb_000009_050 Hb_141990_040 Hb_141990_040 Hb_000304_030--Hb_141990_040 Hb_000009_180 Hb_000009_180 Hb_000304_030--Hb_000009_180 Hb_000225_060 Hb_000225_060 Hb_000304_030--Hb_000225_060 Hb_000465_300 Hb_000465_300 Hb_000304_030--Hb_000465_300 Hb_001341_100 Hb_001341_100 Hb_000304_030--Hb_001341_100 Hb_090963_010 Hb_090963_010 Hb_003835_100--Hb_090963_010 Hb_130016_010 Hb_130016_010 Hb_003835_100--Hb_130016_010 Hb_000922_250 Hb_000922_250 Hb_003835_100--Hb_000922_250 Hb_000270_120 Hb_000270_120 Hb_003835_100--Hb_000270_120 Hb_000086_630 Hb_000086_630 Hb_003835_100--Hb_000086_630 Hb_000152_330 Hb_000152_330 Hb_001619_040--Hb_000152_330 Hb_000226_080 Hb_000226_080 Hb_001619_040--Hb_000226_080 Hb_024468_010 Hb_024468_010 Hb_001619_040--Hb_024468_010 Hb_001117_130 Hb_001117_130 Hb_001619_040--Hb_001117_130 Hb_005356_040 Hb_005356_040 Hb_001619_040--Hb_005356_040 Hb_000649_150 Hb_000649_150 Hb_001619_040--Hb_000649_150 Hb_001604_150 Hb_001604_150 Hb_000009_050--Hb_001604_150 Hb_002701_010 Hb_002701_010 Hb_000009_050--Hb_002701_010 Hb_002307_310 Hb_002307_310 Hb_000009_050--Hb_002307_310 Hb_000684_040 Hb_000684_040 Hb_000009_050--Hb_000684_040 Hb_002631_180 Hb_002631_180 Hb_000009_050--Hb_002631_180 Hb_000398_100 Hb_000398_100 Hb_012573_040--Hb_000398_100 Hb_000173_470 Hb_000173_470 Hb_012573_040--Hb_000173_470 Hb_000951_130 Hb_000951_130 Hb_012573_040--Hb_000951_130 Hb_001825_060 Hb_001825_060 Hb_012573_040--Hb_001825_060 Hb_012573_040--Hb_000270_120 Hb_004916_010 Hb_004916_010 Hb_012573_040--Hb_004916_010 Hb_031910_020 Hb_031910_020 Hb_004993_060--Hb_031910_020 Hb_000549_040 Hb_000549_040 Hb_004993_060--Hb_000549_040 Hb_007044_050 Hb_007044_050 Hb_004993_060--Hb_007044_050 Hb_000603_080 Hb_000603_080 Hb_004993_060--Hb_000603_080 Hb_023771_010 Hb_023771_010 Hb_004993_060--Hb_023771_010 Hb_000152_320 Hb_000152_320 Hb_004993_060--Hb_000152_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.796284 12.655 3.17155 6.20238 5.28793 0.895197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47835 10.5991 9.83157 9.15106 8.12229

CAGE analysis