Hb_090963_010

Information

Type -
Description -
Location Contig90963: 17-756
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62108: 475-594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090963_010 0.0 - - -
2 Hb_003835_100 0.1114436186 - - PREDICTED: putative U-box domain-containing protein 50 [Jatropha curcas]
3 Hb_000448_050 0.1856126907 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
4 Hb_000072_170 0.1856312516 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
5 Hb_000000_230 0.187139189 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
6 Hb_001230_030 0.1874444889 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 isoform X2 [Populus euphratica]
7 Hb_002928_140 0.1883255632 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
8 Hb_002631_040 0.189260385 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
9 Hb_001153_180 0.1899170913 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
10 Hb_006501_160 0.1904589132 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
11 Hb_003528_050 0.1905220672 - - protein transporter, putative [Ricinus communis]
12 Hb_000183_090 0.1912247401 - - PREDICTED: protein EARLY FLOWERING 3 isoform X2 [Jatropha curcas]
13 Hb_001105_110 0.1916334209 - - conserved hypothetical protein [Ricinus communis]
14 Hb_013607_050 0.1969491505 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 2 [Jatropha curcas]
15 Hb_000922_250 0.1972282154 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_010891_020 0.1976313667 - - Cucumisin precursor, putative [Ricinus communis]
17 Hb_011671_270 0.1990397509 - - phosphofructokinase [Hevea brasiliensis]
18 Hb_000086_630 0.1991257139 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
19 Hb_000490_060 0.2009833602 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
20 Hb_001279_170 0.2010187739 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_090963_010 Hb_090963_010 Hb_003835_100 Hb_003835_100 Hb_090963_010--Hb_003835_100 Hb_000448_050 Hb_000448_050 Hb_090963_010--Hb_000448_050 Hb_000072_170 Hb_000072_170 Hb_090963_010--Hb_000072_170 Hb_000000_230 Hb_000000_230 Hb_090963_010--Hb_000000_230 Hb_001230_030 Hb_001230_030 Hb_090963_010--Hb_001230_030 Hb_002928_140 Hb_002928_140 Hb_090963_010--Hb_002928_140 Hb_130016_010 Hb_130016_010 Hb_003835_100--Hb_130016_010 Hb_000922_250 Hb_000922_250 Hb_003835_100--Hb_000922_250 Hb_000270_120 Hb_000270_120 Hb_003835_100--Hb_000270_120 Hb_000021_050 Hb_000021_050 Hb_003835_100--Hb_000021_050 Hb_000086_630 Hb_000086_630 Hb_003835_100--Hb_000086_630 Hb_022318_020 Hb_022318_020 Hb_000448_050--Hb_022318_020 Hb_001648_030 Hb_001648_030 Hb_000448_050--Hb_001648_030 Hb_000398_100 Hb_000398_100 Hb_000448_050--Hb_000398_100 Hb_004223_030 Hb_004223_030 Hb_000448_050--Hb_004223_030 Hb_003657_010 Hb_003657_010 Hb_000448_050--Hb_003657_010 Hb_001825_060 Hb_001825_060 Hb_000448_050--Hb_001825_060 Hb_002126_030 Hb_002126_030 Hb_000072_170--Hb_002126_030 Hb_005276_200 Hb_005276_200 Hb_000072_170--Hb_005276_200 Hb_000085_210 Hb_000085_210 Hb_000072_170--Hb_000085_210 Hb_000749_010 Hb_000749_010 Hb_000072_170--Hb_000749_010 Hb_000699_150 Hb_000699_150 Hb_000072_170--Hb_000699_150 Hb_001439_220 Hb_001439_220 Hb_000072_170--Hb_001439_220 Hb_050847_050 Hb_050847_050 Hb_000000_230--Hb_050847_050 Hb_006588_060 Hb_006588_060 Hb_000000_230--Hb_006588_060 Hb_000521_240 Hb_000521_240 Hb_000000_230--Hb_000521_240 Hb_000000_230--Hb_000699_150 Hb_000490_060 Hb_000490_060 Hb_000000_230--Hb_000490_060 Hb_000086_420 Hb_000086_420 Hb_000000_230--Hb_000086_420 Hb_012812_010 Hb_012812_010 Hb_001230_030--Hb_012812_010 Hb_000340_290 Hb_000340_290 Hb_001230_030--Hb_000340_290 Hb_002400_160 Hb_002400_160 Hb_001230_030--Hb_002400_160 Hb_000684_050 Hb_000684_050 Hb_001230_030--Hb_000684_050 Hb_001488_040 Hb_001488_040 Hb_001230_030--Hb_001488_040 Hb_000331_510 Hb_000331_510 Hb_001230_030--Hb_000331_510 Hb_013607_050 Hb_013607_050 Hb_002928_140--Hb_013607_050 Hb_001635_210 Hb_001635_210 Hb_002928_140--Hb_001635_210 Hb_000868_120 Hb_000868_120 Hb_002928_140--Hb_000868_120 Hb_000359_130 Hb_000359_130 Hb_002928_140--Hb_000359_130 Hb_002928_140--Hb_002126_030 Hb_002203_030 Hb_002203_030 Hb_002928_140--Hb_002203_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.411406 3.64876 2.15483 0.806445 1.20224 0.0747364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94708 1.83638 1.34303 2.66337 2.22977

CAGE analysis