Hb_130016_010

Information

Type -
Description -
Location Contig130016: 67-856
Sequence    

Annotation

kegg
ID rcu:RCOM_1331410
description hypothetical protein
nr
ID XP_002521780.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S711
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1331410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08993: 462-740
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130016_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000619_030 0.1168784942 - - unnamed protein product [Vitis vinifera]
3 Hb_000329_100 0.1397077761 - - PREDICTED: uncharacterized protein LOC105643144 [Jatropha curcas]
4 Hb_000417_200 0.1420828676 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
5 Hb_000046_580 0.1433947734 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
6 Hb_011021_050 0.1456532476 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
7 Hb_004970_170 0.1474841533 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
8 Hb_002609_080 0.1485946686 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
9 Hb_012506_040 0.1490027822 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
10 Hb_000928_090 0.1493435393 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
11 Hb_004306_120 0.1504144627 - - DNA binding protein, putative [Ricinus communis]
12 Hb_005273_030 0.15059896 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
13 Hb_006816_370 0.1509314083 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
14 Hb_000720_150 0.1522077256 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
15 Hb_010180_060 0.1527183002 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
16 Hb_004204_010 0.1533272416 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
17 Hb_000656_060 0.1535976041 - - DNA binding protein, putative [Ricinus communis]
18 Hb_004079_060 0.1540081889 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
19 Hb_171554_040 0.1544217678 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
20 Hb_005488_170 0.1555237874 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_130016_010 Hb_130016_010 Hb_000619_030 Hb_000619_030 Hb_130016_010--Hb_000619_030 Hb_000329_100 Hb_000329_100 Hb_130016_010--Hb_000329_100 Hb_000417_200 Hb_000417_200 Hb_130016_010--Hb_000417_200 Hb_000046_580 Hb_000046_580 Hb_130016_010--Hb_000046_580 Hb_011021_050 Hb_011021_050 Hb_130016_010--Hb_011021_050 Hb_004970_170 Hb_004970_170 Hb_130016_010--Hb_004970_170 Hb_000619_030--Hb_011021_050 Hb_004306_120 Hb_004306_120 Hb_000619_030--Hb_004306_120 Hb_000154_130 Hb_000154_130 Hb_000619_030--Hb_000154_130 Hb_002609_080 Hb_002609_080 Hb_000619_030--Hb_002609_080 Hb_007012_040 Hb_007012_040 Hb_000619_030--Hb_007012_040 Hb_010180_060 Hb_010180_060 Hb_000329_100--Hb_010180_060 Hb_024185_010 Hb_024185_010 Hb_000329_100--Hb_024185_010 Hb_007575_080 Hb_007575_080 Hb_000329_100--Hb_007575_080 Hb_000005_070 Hb_000005_070 Hb_000329_100--Hb_000005_070 Hb_005488_170 Hb_005488_170 Hb_000329_100--Hb_005488_170 Hb_003805_050 Hb_003805_050 Hb_000329_100--Hb_003805_050 Hb_001405_070 Hb_001405_070 Hb_000417_200--Hb_001405_070 Hb_012725_060 Hb_012725_060 Hb_000417_200--Hb_012725_060 Hb_002235_040 Hb_002235_040 Hb_000417_200--Hb_002235_040 Hb_000170_130 Hb_000170_130 Hb_000417_200--Hb_000170_130 Hb_002686_090 Hb_002686_090 Hb_000417_200--Hb_002686_090 Hb_001242_130 Hb_001242_130 Hb_000417_200--Hb_001242_130 Hb_029142_050 Hb_029142_050 Hb_000046_580--Hb_029142_050 Hb_005486_030 Hb_005486_030 Hb_000046_580--Hb_005486_030 Hb_000130_490 Hb_000130_490 Hb_000046_580--Hb_000130_490 Hb_000046_580--Hb_000005_070 Hb_000015_050 Hb_000015_050 Hb_000046_580--Hb_000015_050 Hb_002780_010 Hb_002780_010 Hb_000046_580--Hb_002780_010 Hb_011021_050--Hb_004306_120 Hb_005408_030 Hb_005408_030 Hb_011021_050--Hb_005408_030 Hb_011021_050--Hb_002609_080 Hb_000009_410 Hb_000009_410 Hb_011021_050--Hb_000009_410 Hb_000656_060 Hb_000656_060 Hb_011021_050--Hb_000656_060 Hb_005186_040 Hb_005186_040 Hb_011021_050--Hb_005186_040 Hb_004079_060 Hb_004079_060 Hb_004970_170--Hb_004079_060 Hb_062226_070 Hb_062226_070 Hb_004970_170--Hb_062226_070 Hb_000599_190 Hb_000599_190 Hb_004970_170--Hb_000599_190 Hb_005725_210 Hb_005725_210 Hb_004970_170--Hb_005725_210 Hb_019863_070 Hb_019863_070 Hb_004970_170--Hb_019863_070 Hb_002818_030 Hb_002818_030 Hb_004970_170--Hb_002818_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.80206 6.51462 1.49621 2.95787 4.07529 0.770281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92195 3.28449 3.03938 3.71897 6.73616

CAGE analysis