Hb_000619_030

Information

Type -
Description -
Location Contig619: 14823-21083
Sequence    

Annotation

kegg
ID brp:103838833
description uncharacterized LOC103838833
nr
ID CBI39348.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9NUJ3
description T-complex protein 11-like protein 1 OS=Homo sapiens GN=TCP11L1 PE=1 SV=1
trembl
ID M4FBB8
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra038384 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51351: 17889-18677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000619_030 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_011021_050 0.1138497568 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
3 Hb_004306_120 0.1160996599 - - DNA binding protein, putative [Ricinus communis]
4 Hb_130016_010 0.1168784942 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000154_130 0.1205295347 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
6 Hb_002609_080 0.1262615038 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
7 Hb_007012_040 0.1362733575 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
8 Hb_003849_280 0.1376015197 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
9 Hb_000928_090 0.1389103668 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
10 Hb_000856_070 0.1401681291 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
11 Hb_000204_070 0.1415633821 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
12 Hb_000656_060 0.1432822523 - - DNA binding protein, putative [Ricinus communis]
13 Hb_000110_270 0.1441782677 - - prp4, putative [Ricinus communis]
14 Hb_001726_100 0.1453052251 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
15 Hb_000186_080 0.1465825942 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
16 Hb_000167_120 0.1474093715 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
17 Hb_171554_040 0.1489189376 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
18 Hb_001998_150 0.1494134305 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
19 Hb_000340_290 0.1509610464 - - PREDICTED: piezo-type mechanosensitive ion channel homolog [Jatropha curcas]
20 Hb_001477_020 0.1514936952 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000619_030 Hb_000619_030 Hb_011021_050 Hb_011021_050 Hb_000619_030--Hb_011021_050 Hb_004306_120 Hb_004306_120 Hb_000619_030--Hb_004306_120 Hb_130016_010 Hb_130016_010 Hb_000619_030--Hb_130016_010 Hb_000154_130 Hb_000154_130 Hb_000619_030--Hb_000154_130 Hb_002609_080 Hb_002609_080 Hb_000619_030--Hb_002609_080 Hb_007012_040 Hb_007012_040 Hb_000619_030--Hb_007012_040 Hb_011021_050--Hb_004306_120 Hb_005408_030 Hb_005408_030 Hb_011021_050--Hb_005408_030 Hb_011021_050--Hb_002609_080 Hb_000009_410 Hb_000009_410 Hb_011021_050--Hb_000009_410 Hb_000656_060 Hb_000656_060 Hb_011021_050--Hb_000656_060 Hb_005186_040 Hb_005186_040 Hb_011021_050--Hb_005186_040 Hb_004306_120--Hb_002609_080 Hb_003849_280 Hb_003849_280 Hb_004306_120--Hb_003849_280 Hb_000363_300 Hb_000363_300 Hb_004306_120--Hb_000363_300 Hb_004306_120--Hb_005408_030 Hb_001648_020 Hb_001648_020 Hb_004306_120--Hb_001648_020 Hb_000329_100 Hb_000329_100 Hb_130016_010--Hb_000329_100 Hb_000417_200 Hb_000417_200 Hb_130016_010--Hb_000417_200 Hb_000046_580 Hb_000046_580 Hb_130016_010--Hb_000046_580 Hb_130016_010--Hb_011021_050 Hb_004970_170 Hb_004970_170 Hb_130016_010--Hb_004970_170 Hb_000445_130 Hb_000445_130 Hb_000154_130--Hb_000445_130 Hb_000154_130--Hb_007012_040 Hb_000367_020 Hb_000367_020 Hb_000154_130--Hb_000367_020 Hb_000154_130--Hb_011021_050 Hb_003124_270 Hb_003124_270 Hb_000154_130--Hb_003124_270 Hb_001951_100 Hb_001951_100 Hb_000154_130--Hb_001951_100 Hb_001691_200 Hb_001691_200 Hb_002609_080--Hb_001691_200 Hb_001377_100 Hb_001377_100 Hb_002609_080--Hb_001377_100 Hb_002609_080--Hb_003849_280 Hb_005181_050 Hb_005181_050 Hb_002609_080--Hb_005181_050 Hb_007012_040--Hb_003124_270 Hb_004884_090 Hb_004884_090 Hb_007012_040--Hb_004884_090 Hb_171554_040 Hb_171554_040 Hb_007012_040--Hb_171554_040 Hb_004551_020 Hb_004551_020 Hb_007012_040--Hb_004551_020 Hb_007012_040--Hb_000445_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00846 4.35264 1.07028 1.64206 1.19191 0.547366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06652 1.89181 1.1926 2.52525 5.3188

CAGE analysis