Hb_002928_140

Information

Type -
Description -
Location Contig2928: 95542-101587
Sequence    

Annotation

kegg
ID rcu:RCOM_1601000
description protein binding protein, putative
nr
ID XP_012073654.1
description PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
swissprot
ID Q8LEV3
description BTB/POZ domain-containing protein At2g30600 OS=Arabidopsis thaliana GN=At2g30600/At2g30610 PE=2 SV=1
trembl
ID B9R8N1
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1601000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30694: 95559-101525 , PASA_asmbl_30695: 95559-101525 , PASA_asmbl_30696: 95974-96445 , PASA_asmbl_30697: 95974-96640 , PASA_asmbl_30698: 101776-102018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_140 0.0 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
2 Hb_013607_050 0.0614965195 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 2 [Jatropha curcas]
3 Hb_001635_210 0.0932163014 - - PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
4 Hb_000868_120 0.101083536 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
5 Hb_000359_130 0.1034882113 - - 4-hydroxyphenylpyruvate dioxygenase [Hevea brasiliensis]
6 Hb_002126_030 0.110367868 - - ferrochelatase, putative [Ricinus communis]
7 Hb_002203_030 0.1159913678 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
8 Hb_000510_360 0.1183666478 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
9 Hb_010407_080 0.1194791472 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
10 Hb_004333_040 0.1218826069 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
11 Hb_002107_100 0.1245594375 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
12 Hb_002411_190 0.1246084497 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
13 Hb_010287_020 0.1252317027 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
14 Hb_000373_170 0.1265342949 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
15 Hb_001300_280 0.126792415 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
16 Hb_000445_060 0.1269889429 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
17 Hb_002768_050 0.1275301295 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
18 Hb_000137_010 0.1275667996 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
19 Hb_005977_030 0.12760096 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
20 Hb_000173_190 0.1276921735 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002928_140 Hb_002928_140 Hb_013607_050 Hb_013607_050 Hb_002928_140--Hb_013607_050 Hb_001635_210 Hb_001635_210 Hb_002928_140--Hb_001635_210 Hb_000868_120 Hb_000868_120 Hb_002928_140--Hb_000868_120 Hb_000359_130 Hb_000359_130 Hb_002928_140--Hb_000359_130 Hb_002126_030 Hb_002126_030 Hb_002928_140--Hb_002126_030 Hb_002203_030 Hb_002203_030 Hb_002928_140--Hb_002203_030 Hb_013607_050--Hb_001635_210 Hb_010407_080 Hb_010407_080 Hb_013607_050--Hb_010407_080 Hb_000510_360 Hb_000510_360 Hb_013607_050--Hb_000510_360 Hb_002276_040 Hb_002276_040 Hb_013607_050--Hb_002276_040 Hb_013607_050--Hb_000359_130 Hb_002411_190 Hb_002411_190 Hb_001635_210--Hb_002411_190 Hb_000445_060 Hb_000445_060 Hb_001635_210--Hb_000445_060 Hb_008642_060 Hb_008642_060 Hb_001635_210--Hb_008642_060 Hb_001635_210--Hb_000359_130 Hb_001635_210--Hb_000868_120 Hb_005288_070 Hb_005288_070 Hb_001635_210--Hb_005288_070 Hb_000868_120--Hb_000445_060 Hb_010287_020 Hb_010287_020 Hb_000868_120--Hb_010287_020 Hb_033642_120 Hb_033642_120 Hb_000868_120--Hb_033642_120 Hb_000676_330 Hb_000676_330 Hb_000868_120--Hb_000676_330 Hb_001439_220 Hb_001439_220 Hb_000868_120--Hb_001439_220 Hb_000661_120 Hb_000661_120 Hb_000868_120--Hb_000661_120 Hb_000359_130--Hb_002411_190 Hb_000359_130--Hb_000868_120 Hb_000359_130--Hb_005288_070 Hb_000359_130--Hb_002126_030 Hb_000699_150 Hb_000699_150 Hb_002126_030--Hb_000699_150 Hb_004333_040 Hb_004333_040 Hb_002126_030--Hb_004333_040 Hb_011674_040 Hb_011674_040 Hb_002126_030--Hb_011674_040 Hb_000072_170 Hb_000072_170 Hb_002126_030--Hb_000072_170 Hb_007413_010 Hb_007413_010 Hb_002126_030--Hb_007413_010 Hb_113853_010 Hb_113853_010 Hb_002126_030--Hb_113853_010 Hb_000723_030 Hb_000723_030 Hb_002203_030--Hb_000723_030 Hb_000160_140 Hb_000160_140 Hb_002203_030--Hb_000160_140 Hb_004225_060 Hb_004225_060 Hb_002203_030--Hb_004225_060 Hb_000476_060 Hb_000476_060 Hb_002203_030--Hb_000476_060 Hb_000176_020 Hb_000176_020 Hb_002203_030--Hb_000176_020 Hb_000230_460 Hb_000230_460 Hb_002203_030--Hb_000230_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.05774 34.635 37.015 14.2048 11.3579 9.76242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5898 9.56914 12.7328 22.716 23.4655

CAGE analysis