Hb_013607_050

Information

Type -
Description -
Location Contig13607: 26185-31125
Sequence    

Annotation

kegg
ID rcu:RCOM_1033320
description Glycerol-3-phosphate acyltransferase, putative (EC:2.3.1.15)
nr
ID XP_012078119.1
description PREDICTED: probable glycerol-3-phosphate acyltransferase 2 [Jatropha curcas]
swissprot
ID Q9SYJ2
description Probable glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana GN=GPAT3 PE=2 SV=1
trembl
ID B9RJD8
description Glycerol-3-phosphate acyltransferase, putative OS=Ricinus communis GN=RCOM_1033320 PE=4 SV=1
Gene Ontology
ID GO:0004366
description probable glycerol-3-phosphate acyltransferase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013607_050 0.0 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 2 [Jatropha curcas]
2 Hb_002928_140 0.0614965195 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
3 Hb_001635_210 0.136924585 - - PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
4 Hb_010407_080 0.1400821146 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
5 Hb_000510_360 0.1465399544 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
6 Hb_002276_040 0.1476078771 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
7 Hb_000359_130 0.1479308709 - - 4-hydroxyphenylpyruvate dioxygenase [Hevea brasiliensis]
8 Hb_000868_120 0.1486310373 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
9 Hb_000009_520 0.1504366653 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
10 Hb_104920_010 0.1504540264 - - hypothetical protein VITISV_031859 [Vitis vinifera]
11 Hb_002203_030 0.1507221002 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
12 Hb_000161_240 0.1514569521 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
13 Hb_002126_030 0.1528705552 - - ferrochelatase, putative [Ricinus communis]
14 Hb_002411_190 0.1528740602 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
15 Hb_002675_250 0.1529011065 - - aspartate aminotransferase, putative [Ricinus communis]
16 Hb_000076_210 0.153482387 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
17 Hb_004333_040 0.1536564309 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
18 Hb_002107_100 0.1544569779 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
19 Hb_000476_060 0.1574923959 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
20 Hb_000318_150 0.1586868565 - - RNA-binding protein Nova-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_013607_050 Hb_013607_050 Hb_002928_140 Hb_002928_140 Hb_013607_050--Hb_002928_140 Hb_001635_210 Hb_001635_210 Hb_013607_050--Hb_001635_210 Hb_010407_080 Hb_010407_080 Hb_013607_050--Hb_010407_080 Hb_000510_360 Hb_000510_360 Hb_013607_050--Hb_000510_360 Hb_002276_040 Hb_002276_040 Hb_013607_050--Hb_002276_040 Hb_000359_130 Hb_000359_130 Hb_013607_050--Hb_000359_130 Hb_002928_140--Hb_001635_210 Hb_000868_120 Hb_000868_120 Hb_002928_140--Hb_000868_120 Hb_002928_140--Hb_000359_130 Hb_002126_030 Hb_002126_030 Hb_002928_140--Hb_002126_030 Hb_002203_030 Hb_002203_030 Hb_002928_140--Hb_002203_030 Hb_002411_190 Hb_002411_190 Hb_001635_210--Hb_002411_190 Hb_000445_060 Hb_000445_060 Hb_001635_210--Hb_000445_060 Hb_008642_060 Hb_008642_060 Hb_001635_210--Hb_008642_060 Hb_001635_210--Hb_000359_130 Hb_001635_210--Hb_000868_120 Hb_005288_070 Hb_005288_070 Hb_001635_210--Hb_005288_070 Hb_007839_020 Hb_007839_020 Hb_010407_080--Hb_007839_020 Hb_002686_230 Hb_002686_230 Hb_010407_080--Hb_002686_230 Hb_022425_060 Hb_022425_060 Hb_010407_080--Hb_022425_060 Hb_001269_380 Hb_001269_380 Hb_010407_080--Hb_001269_380 Hb_001329_200 Hb_001329_200 Hb_010407_080--Hb_001329_200 Hb_033312_130 Hb_033312_130 Hb_010407_080--Hb_033312_130 Hb_000085_170 Hb_000085_170 Hb_000510_360--Hb_000085_170 Hb_033312_040 Hb_033312_040 Hb_000510_360--Hb_033312_040 Hb_003758_010 Hb_003758_010 Hb_000510_360--Hb_003758_010 Hb_006189_020 Hb_006189_020 Hb_000510_360--Hb_006189_020 Hb_000321_140 Hb_000321_140 Hb_000510_360--Hb_000321_140 Hb_001817_170 Hb_001817_170 Hb_000510_360--Hb_001817_170 Hb_002686_140 Hb_002686_140 Hb_002276_040--Hb_002686_140 Hb_005074_020 Hb_005074_020 Hb_002276_040--Hb_005074_020 Hb_000080_110 Hb_000080_110 Hb_002276_040--Hb_000080_110 Hb_009615_160 Hb_009615_160 Hb_002276_040--Hb_009615_160 Hb_011883_020 Hb_011883_020 Hb_002276_040--Hb_011883_020 Hb_002276_040--Hb_001329_200 Hb_000359_130--Hb_002411_190 Hb_000359_130--Hb_000868_120 Hb_000359_130--Hb_005288_070 Hb_000359_130--Hb_002126_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0880529 0.372796 0.390367 0.170206 0.116968 0.0835557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.282304 0.0634474 0.177089 0.25414 0.262688

CAGE analysis