Hb_000329_550

Information

Type transcription factor
Description TF Family: SBP
Location Contig329: 435720-438069
Sequence    

Annotation

kegg
ID rcu:RCOM_1609500
description LIGULELESS1 protein, putative
nr
ID XP_012083646.1
description PREDICTED: squamosa promoter-binding-like protein 8 [Jatropha curcas]
swissprot
ID Q8GXL3
description Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana GN=SPL8 PE=1 SV=2
trembl
ID A0A067JXX7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14587 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34555: 435780-437493 , PASA_asmbl_34556: 436096-436641 , PASA_asmbl_34557: 436414-436643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_550 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 8 [Jatropha curcas]
2 Hb_001045_040 0.1841583569 - - PREDICTED: carbonyl reductase [NADPH] 2 [Jatropha curcas]
3 Hb_098533_020 0.1887476177 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
4 Hb_118282_010 0.198839494 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
5 Hb_000394_110 0.2017196024 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
6 Hb_000189_540 0.2135683188 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
7 Hb_001959_010 0.2174264079 - - myosin XI, putative [Ricinus communis]
8 Hb_001252_220 0.2218773178 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
9 Hb_127194_010 0.2270456081 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
10 Hb_003462_160 0.2291435063 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
11 Hb_000031_080 0.2292707739 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
12 Hb_000340_500 0.2299304847 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
13 Hb_002260_010 0.2313457051 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
14 Hb_000025_370 0.2351197703 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
15 Hb_000029_080 0.2377512562 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
16 Hb_005375_050 0.2385330523 - - inorganic pyrophosphatase, putative [Ricinus communis]
17 Hb_002671_090 0.2387472441 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
18 Hb_002909_020 0.2434852202 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
19 Hb_002686_180 0.2438711292 - - PREDICTED: early nodulin-93-like [Populus euphratica]
20 Hb_000742_280 0.2449511082 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000329_550 Hb_000329_550 Hb_001045_040 Hb_001045_040 Hb_000329_550--Hb_001045_040 Hb_098533_020 Hb_098533_020 Hb_000329_550--Hb_098533_020 Hb_118282_010 Hb_118282_010 Hb_000329_550--Hb_118282_010 Hb_000394_110 Hb_000394_110 Hb_000329_550--Hb_000394_110 Hb_000189_540 Hb_000189_540 Hb_000329_550--Hb_000189_540 Hb_001959_010 Hb_001959_010 Hb_000329_550--Hb_001959_010 Hb_002936_080 Hb_002936_080 Hb_001045_040--Hb_002936_080 Hb_008948_100 Hb_008948_100 Hb_001045_040--Hb_008948_100 Hb_000676_340 Hb_000676_340 Hb_001045_040--Hb_000676_340 Hb_001252_220 Hb_001252_220 Hb_001045_040--Hb_001252_220 Hb_003462_160 Hb_003462_160 Hb_001045_040--Hb_003462_160 Hb_000031_080 Hb_000031_080 Hb_098533_020--Hb_000031_080 Hb_098533_020--Hb_000189_540 Hb_000465_510 Hb_000465_510 Hb_098533_020--Hb_000465_510 Hb_000152_100 Hb_000152_100 Hb_098533_020--Hb_000152_100 Hb_000340_500 Hb_000340_500 Hb_098533_020--Hb_000340_500 Hb_005015_030 Hb_005015_030 Hb_098533_020--Hb_005015_030 Hb_000025_370 Hb_000025_370 Hb_118282_010--Hb_000025_370 Hb_011053_010 Hb_011053_010 Hb_118282_010--Hb_011053_010 Hb_000740_040 Hb_000740_040 Hb_118282_010--Hb_000740_040 Hb_006445_020 Hb_006445_020 Hb_118282_010--Hb_006445_020 Hb_002909_020 Hb_002909_020 Hb_118282_010--Hb_002909_020 Hb_001073_080 Hb_001073_080 Hb_118282_010--Hb_001073_080 Hb_000510_230 Hb_000510_230 Hb_000394_110--Hb_000510_230 Hb_127194_010 Hb_127194_010 Hb_000394_110--Hb_127194_010 Hb_000057_140 Hb_000057_140 Hb_000394_110--Hb_000057_140 Hb_000394_110--Hb_001959_010 Hb_007558_020 Hb_007558_020 Hb_000394_110--Hb_007558_020 Hb_000394_110--Hb_098533_020 Hb_001322_070 Hb_001322_070 Hb_000189_540--Hb_001322_070 Hb_002686_180 Hb_002686_180 Hb_000189_540--Hb_002686_180 Hb_098315_020 Hb_098315_020 Hb_000189_540--Hb_098315_020 Hb_020805_060 Hb_020805_060 Hb_000189_540--Hb_020805_060 Hb_000155_090 Hb_000155_090 Hb_000189_540--Hb_000155_090 Hb_000152_210 Hb_000152_210 Hb_000189_540--Hb_000152_210 Hb_002671_090 Hb_002671_090 Hb_001959_010--Hb_002671_090 Hb_001114_080 Hb_001114_080 Hb_001959_010--Hb_001114_080 Hb_001959_010--Hb_000025_370 Hb_009111_020 Hb_009111_020 Hb_001959_010--Hb_009111_020 Hb_000300_700 Hb_000300_700 Hb_001959_010--Hb_000300_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02705 3.13421 10.9929 2.17915 0.166397 0.36477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.28175 12.9227 3.78243 0.423843 2.46575

CAGE analysis