Hb_118419_030

Information

Type transcription factor
Description TF Family: FAR1
Location Contig118419: 11804-12382
Sequence    

Annotation

kegg
ID rcu:RCOM_1627480
description hypothetical protein
nr
ID XP_012084757.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15098 PE=4 SV=1
Gene Ontology
ID GO:0006355
description far-red impaired responsive family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118419_030 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
2 Hb_009812_020 0.2269347639 - - -
3 Hb_019973_030 0.2301936669 - - -
4 Hb_001452_140 0.2498910659 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
5 Hb_000684_370 0.2610914389 - - -
6 Hb_163950_010 0.2621423933 - - -
7 Hb_003906_100 0.2651662829 - - hypothetical protein JCGZ_26174 [Jatropha curcas]
8 Hb_004907_130 0.2695283514 - - -
9 Hb_096962_020 0.2703980906 - - -
10 Hb_007336_040 0.2709209503 - - protein binding protein, putative [Ricinus communis]
11 Hb_001514_190 0.2725620637 - - -
12 Hb_000014_100 0.2745105282 - - -
13 Hb_001437_240 0.2777586948 - - -
14 Hb_008014_070 0.2797156229 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_000003_040 0.2805536438 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
16 Hb_034299_060 0.2820528074 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
17 Hb_004226_020 0.2865211351 - - -
18 Hb_007245_090 0.2867966717 - - -
19 Hb_000436_010 0.2875320996 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
20 Hb_002924_050 0.2880208382 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]

Gene co-expression network

sample Hb_118419_030 Hb_118419_030 Hb_009812_020 Hb_009812_020 Hb_118419_030--Hb_009812_020 Hb_019973_030 Hb_019973_030 Hb_118419_030--Hb_019973_030 Hb_001452_140 Hb_001452_140 Hb_118419_030--Hb_001452_140 Hb_000684_370 Hb_000684_370 Hb_118419_030--Hb_000684_370 Hb_163950_010 Hb_163950_010 Hb_118419_030--Hb_163950_010 Hb_003906_100 Hb_003906_100 Hb_118419_030--Hb_003906_100 Hb_000003_840 Hb_000003_840 Hb_009812_020--Hb_000003_840 Hb_080477_050 Hb_080477_050 Hb_009812_020--Hb_080477_050 Hb_001437_240 Hb_001437_240 Hb_009812_020--Hb_001437_240 Hb_009812_020--Hb_163950_010 Hb_002936_050 Hb_002936_050 Hb_009812_020--Hb_002936_050 Hb_002897_060 Hb_002897_060 Hb_009812_020--Hb_002897_060 Hb_019973_030--Hb_001452_140 Hb_004226_020 Hb_004226_020 Hb_019973_030--Hb_004226_020 Hb_007245_090 Hb_007245_090 Hb_019973_030--Hb_007245_090 Hb_000014_100 Hb_000014_100 Hb_019973_030--Hb_000014_100 Hb_008376_010 Hb_008376_010 Hb_019973_030--Hb_008376_010 Hb_001930_070 Hb_001930_070 Hb_019973_030--Hb_001930_070 Hb_002387_020 Hb_002387_020 Hb_001452_140--Hb_002387_020 Hb_003751_110 Hb_003751_110 Hb_001452_140--Hb_003751_110 Hb_001452_140--Hb_004226_020 Hb_001584_310 Hb_001584_310 Hb_001452_140--Hb_001584_310 Hb_096962_020 Hb_096962_020 Hb_001452_140--Hb_096962_020 Hb_000684_370--Hb_000014_100 Hb_005657_010 Hb_005657_010 Hb_000684_370--Hb_005657_010 Hb_001767_010 Hb_001767_010 Hb_000684_370--Hb_001767_010 Hb_143629_050 Hb_143629_050 Hb_000684_370--Hb_143629_050 Hb_019153_040 Hb_019153_040 Hb_000684_370--Hb_019153_040 Hb_004800_160 Hb_004800_160 Hb_000684_370--Hb_004800_160 Hb_000749_250 Hb_000749_250 Hb_163950_010--Hb_000749_250 Hb_163950_010--Hb_001437_240 Hb_143629_090 Hb_143629_090 Hb_163950_010--Hb_143629_090 Hb_000193_250 Hb_000193_250 Hb_163950_010--Hb_000193_250 Hb_004882_020 Hb_004882_020 Hb_163950_010--Hb_004882_020 Hb_002909_060 Hb_002909_060 Hb_003906_100--Hb_002909_060 Hb_009486_190 Hb_009486_190 Hb_003906_100--Hb_009486_190 Hb_002540_030 Hb_002540_030 Hb_003906_100--Hb_002540_030 Hb_000261_440 Hb_000261_440 Hb_003906_100--Hb_000261_440 Hb_004607_150 Hb_004607_150 Hb_003906_100--Hb_004607_150 Hb_000003_270 Hb_000003_270 Hb_003906_100--Hb_000003_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.345492 0.124837 0.034939 0 0.264418 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.319565 0.0837104 0.436841 0.137621 0

CAGE analysis