Hb_003906_100

Information

Type -
Description -
Location Contig3906: 54187-54645
Sequence    

Annotation

kegg
ID pop:POPTR_0015s13680g
description POPTRDRAFT_575764; pentatricopeptide repeat-containing family protein
nr
ID KDP22343.1
description hypothetical protein JCGZ_26174 [Jatropha curcas]
swissprot
ID Q9LUS3
description Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
trembl
ID A0A067JHS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26174 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003906_100 0.0 - - hypothetical protein JCGZ_26174 [Jatropha curcas]
2 Hb_002909_060 0.1553165766 - - 3-5 exonuclease, putative [Ricinus communis]
3 Hb_009486_190 0.1701954994 - - ATP binding protein, putative [Ricinus communis]
4 Hb_002540_030 0.1705203846 - - hypothetical protein 32 [Hevea brasiliensis]
5 Hb_000261_440 0.1746017248 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
6 Hb_004607_150 0.1798740431 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
7 Hb_000003_270 0.1826342996 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
8 Hb_007666_020 0.1831172194 - - alkaline phytoceramidase, putative [Ricinus communis]
9 Hb_054127_040 0.1841421611 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
10 Hb_002798_060 0.1847589443 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
11 Hb_001047_150 0.1873865928 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
12 Hb_023536_010 0.1878122982 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
13 Hb_000003_050 0.1879563902 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
14 Hb_009812_020 0.188830794 - - -
15 Hb_012366_020 0.1905368984 - - unnamed protein product [Vitis vinifera]
16 Hb_003151_050 0.1937708803 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
17 Hb_000116_470 0.1957864177 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
18 Hb_009493_010 0.1980950997 - - Minor allergen Alt a, putative [Ricinus communis]
19 Hb_002053_060 0.1984890845 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
20 Hb_000165_010 0.2006305618 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]

Gene co-expression network

sample Hb_003906_100 Hb_003906_100 Hb_002909_060 Hb_002909_060 Hb_003906_100--Hb_002909_060 Hb_009486_190 Hb_009486_190 Hb_003906_100--Hb_009486_190 Hb_002540_030 Hb_002540_030 Hb_003906_100--Hb_002540_030 Hb_000261_440 Hb_000261_440 Hb_003906_100--Hb_000261_440 Hb_004607_150 Hb_004607_150 Hb_003906_100--Hb_004607_150 Hb_000003_270 Hb_000003_270 Hb_003906_100--Hb_000003_270 Hb_002759_230 Hb_002759_230 Hb_002909_060--Hb_002759_230 Hb_002027_400 Hb_002027_400 Hb_002909_060--Hb_002027_400 Hb_002909_060--Hb_002540_030 Hb_002053_060 Hb_002053_060 Hb_002909_060--Hb_002053_060 Hb_001912_010 Hb_001912_010 Hb_002909_060--Hb_001912_010 Hb_010172_070 Hb_010172_070 Hb_002909_060--Hb_010172_070 Hb_002798_060 Hb_002798_060 Hb_009486_190--Hb_002798_060 Hb_000196_090 Hb_000196_090 Hb_009486_190--Hb_000196_090 Hb_016604_020 Hb_016604_020 Hb_009486_190--Hb_016604_020 Hb_033772_050 Hb_033772_050 Hb_009486_190--Hb_033772_050 Hb_009486_190--Hb_002540_030 Hb_002609_280 Hb_002609_280 Hb_009486_190--Hb_002609_280 Hb_014720_080 Hb_014720_080 Hb_002540_030--Hb_014720_080 Hb_002540_030--Hb_010172_070 Hb_000922_270 Hb_000922_270 Hb_002540_030--Hb_000922_270 Hb_007666_020 Hb_007666_020 Hb_002540_030--Hb_007666_020 Hb_003893_090 Hb_003893_090 Hb_002540_030--Hb_003893_090 Hb_001538_100 Hb_001538_100 Hb_002540_030--Hb_001538_100 Hb_000086_060 Hb_000086_060 Hb_000261_440--Hb_000086_060 Hb_000005_330 Hb_000005_330 Hb_000261_440--Hb_000005_330 Hb_000261_440--Hb_007666_020 Hb_022092_120 Hb_022092_120 Hb_000261_440--Hb_022092_120 Hb_021254_030 Hb_021254_030 Hb_000261_440--Hb_021254_030 Hb_003151_050 Hb_003151_050 Hb_000261_440--Hb_003151_050 Hb_180333_010 Hb_180333_010 Hb_004607_150--Hb_180333_010 Hb_006189_010 Hb_006189_010 Hb_004607_150--Hb_006189_010 Hb_004607_150--Hb_002798_060 Hb_000116_470 Hb_000116_470 Hb_004607_150--Hb_000116_470 Hb_004012_010 Hb_004012_010 Hb_004607_150--Hb_004012_010 Hb_004920_040 Hb_004920_040 Hb_004607_150--Hb_004920_040 Hb_003209_200 Hb_003209_200 Hb_000003_270--Hb_003209_200 Hb_002138_010 Hb_002138_010 Hb_000003_270--Hb_002138_010 Hb_001338_040 Hb_001338_040 Hb_000003_270--Hb_001338_040 Hb_012291_030 Hb_012291_030 Hb_000003_270--Hb_012291_030 Hb_006065_010 Hb_006065_010 Hb_000003_270--Hb_006065_010 Hb_000196_080 Hb_000196_080 Hb_000003_270--Hb_000196_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11185 1.18704 0.164067 0.17904 0.767328 0.23787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.01576 1.46158 1.82201 0.459862 0

CAGE analysis