Hb_001798_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig1798: 14186-17285
Sequence    

Annotation

kegg
ID zma:103627335
description NAC transcription factor NAM-1-like
nr
ID ACD63649.1
description NAC domain containing protein 2-like protein, partial [Helianthus annuus]
swissprot
ID -
description -
trembl
ID B2ZKU7
description NAC domain containing protein 2-like protein (Fragment) OS=Helianthus annuus PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 68-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001798_010 0.0 transcription factor TF Family: NAC NAC domain containing protein 2-like protein, partial [Helianthus annuus]
2 Hb_000988_040 0.208107659 - - -
3 Hb_002890_270 0.290490884 - - -
4 Hb_001364_040 0.2950297873 - - -
5 Hb_000638_020 0.3077002532 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
6 Hb_002890_250 0.3104434756 - - PREDICTED: uncharacterized protein LOC102611387 isoform X2 [Citrus sinensis]
7 Hb_004147_040 0.3272720906 - - hypothetical protein JCGZ_15918 [Jatropha curcas]
8 Hb_007576_030 0.3282686519 - - -
9 Hb_098315_030 0.3285850163 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
10 Hb_081245_010 0.3320569713 - - Caffeic acid 3-O-methyltransferase [Morus notabilis]
11 Hb_000322_190 0.3339789598 - - -
12 Hb_004942_010 0.3369980575 - - hypothetical protein AMTR_s00057p00201180 [Amborella trichopoda]
13 Hb_004128_210 0.3393516987 - - PREDICTED: protein ALUMINUM SENSITIVE 3 [Jatropha curcas]
14 Hb_000614_100 0.3492904435 - - 3-oxoacyl-[acyl-carrier-protein] reductase [Populus trichocarpa]
15 Hb_000062_440 0.3592384589 - - hypothetical protein JCGZ_17832 [Jatropha curcas]
16 Hb_005653_120 0.3601055859 - - PREDICTED: fatty acyl-CoA reductase 3-like isoform X2 [Prunus mume]
17 Hb_000832_230 0.364508221 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
18 Hb_003159_090 0.3648393622 - - -
19 Hb_148122_010 0.3660306273 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
20 Hb_015974_010 0.3670728541 - - endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]

Gene co-expression network

sample Hb_001798_010 Hb_001798_010 Hb_000988_040 Hb_000988_040 Hb_001798_010--Hb_000988_040 Hb_002890_270 Hb_002890_270 Hb_001798_010--Hb_002890_270 Hb_001364_040 Hb_001364_040 Hb_001798_010--Hb_001364_040 Hb_000638_020 Hb_000638_020 Hb_001798_010--Hb_000638_020 Hb_002890_250 Hb_002890_250 Hb_001798_010--Hb_002890_250 Hb_004147_040 Hb_004147_040 Hb_001798_010--Hb_004147_040 Hb_000988_040--Hb_001364_040 Hb_000988_040--Hb_002890_250 Hb_007576_030 Hb_007576_030 Hb_000988_040--Hb_007576_030 Hb_000988_040--Hb_000638_020 Hb_004942_010 Hb_004942_010 Hb_000988_040--Hb_004942_010 Hb_002820_140 Hb_002820_140 Hb_002890_270--Hb_002820_140 Hb_015974_010 Hb_015974_010 Hb_002890_270--Hb_015974_010 Hb_005653_120 Hb_005653_120 Hb_002890_270--Hb_005653_120 Hb_002890_270--Hb_000638_020 Hb_001198_030 Hb_001198_030 Hb_002890_270--Hb_001198_030 Hb_002099_050 Hb_002099_050 Hb_002890_270--Hb_002099_050 Hb_000997_330 Hb_000997_330 Hb_001364_040--Hb_000997_330 Hb_000193_240 Hb_000193_240 Hb_001364_040--Hb_000193_240 Hb_001364_040--Hb_000638_020 Hb_000832_230 Hb_000832_230 Hb_001364_040--Hb_000832_230 Hb_001143_090 Hb_001143_090 Hb_001364_040--Hb_001143_090 Hb_000638_020--Hb_000193_240 Hb_000380_020 Hb_000380_020 Hb_000638_020--Hb_000380_020 Hb_000638_020--Hb_015974_010 Hb_004453_140 Hb_004453_140 Hb_000638_020--Hb_004453_140 Hb_163950_010 Hb_163950_010 Hb_000638_020--Hb_163950_010 Hb_000638_020--Hb_000832_230 Hb_001198_050 Hb_001198_050 Hb_002890_250--Hb_001198_050 Hb_002890_250--Hb_000638_020 Hb_008014_070 Hb_008014_070 Hb_002890_250--Hb_008014_070 Hb_000684_370 Hb_000684_370 Hb_002890_250--Hb_000684_370 Hb_004907_130 Hb_004907_130 Hb_002890_250--Hb_004907_130 Hb_000240_060 Hb_000240_060 Hb_004147_040--Hb_000240_060 Hb_004147_040--Hb_001198_050 Hb_004147_040--Hb_002890_250 Hb_003918_040 Hb_003918_040 Hb_004147_040--Hb_003918_040 Hb_005183_160 Hb_005183_160 Hb_004147_040--Hb_005183_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0410049 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0325012 0.0255691 0.0479741 0 0

CAGE analysis