Hb_004147_040

Information

Type -
Description -
Location Contig4147: 75983-78019
Sequence    

Annotation

kegg
ID tcc:TCM_015317
description Pectin lyase-like superfamily protein
nr
ID KDP41511.1
description hypothetical protein JCGZ_15918 [Jatropha curcas]
swissprot
ID Q9C8G4
description Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1
trembl
ID A0A067KZ75
description Pectate lyase OS=Jatropha curcas GN=JCGZ_15918 PE=3 SV=1
Gene Ontology
ID GO:0030570
description probable pectate lyase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004147_040 0.0 - - hypothetical protein JCGZ_15918 [Jatropha curcas]
2 Hb_001798_010 0.3272720906 transcription factor TF Family: NAC NAC domain containing protein 2-like protein, partial [Helianthus annuus]
3 Hb_000240_060 0.3438989977 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_001198_050 0.3447173203 - - hypothetical protein POPTR_0004s22990g [Populus trichocarpa]
5 Hb_002890_250 0.3799617968 - - PREDICTED: uncharacterized protein LOC102611387 isoform X2 [Citrus sinensis]
6 Hb_003918_040 0.3823423064 - - -
7 Hb_005183_160 0.3830134631 - - -
8 Hb_004304_050 0.383539376 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_001252_150 0.3962036797 - - -
10 Hb_000988_040 0.4053607691 - - -
11 Hb_098315_030 0.4128652727 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
12 Hb_008880_010 0.4158976713 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 isoform X2 [Nelumbo nucifera]
13 Hb_061390_010 0.4159458273 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
14 Hb_000300_330 0.416176175 - - -
15 Hb_115350_010 0.4165210502 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
16 Hb_002779_020 0.4166900199 - - transcription factor, putative [Ricinus communis]
17 Hb_136696_010 0.417004791 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
18 Hb_068804_160 0.4219199322 transcription factor TF Family: MIKC hypothetical protein JCGZ_12632 [Jatropha curcas]
19 Hb_000733_020 0.4332643162 - - -
20 Hb_000300_340 0.4362114625 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_004147_040 Hb_004147_040 Hb_001798_010 Hb_001798_010 Hb_004147_040--Hb_001798_010 Hb_000240_060 Hb_000240_060 Hb_004147_040--Hb_000240_060 Hb_001198_050 Hb_001198_050 Hb_004147_040--Hb_001198_050 Hb_002890_250 Hb_002890_250 Hb_004147_040--Hb_002890_250 Hb_003918_040 Hb_003918_040 Hb_004147_040--Hb_003918_040 Hb_005183_160 Hb_005183_160 Hb_004147_040--Hb_005183_160 Hb_000988_040 Hb_000988_040 Hb_001798_010--Hb_000988_040 Hb_002890_270 Hb_002890_270 Hb_001798_010--Hb_002890_270 Hb_001364_040 Hb_001364_040 Hb_001798_010--Hb_001364_040 Hb_000638_020 Hb_000638_020 Hb_001798_010--Hb_000638_020 Hb_001798_010--Hb_002890_250 Hb_042778_010 Hb_042778_010 Hb_000240_060--Hb_042778_010 Hb_137133_010 Hb_137133_010 Hb_000240_060--Hb_137133_010 Hb_001357_070 Hb_001357_070 Hb_000240_060--Hb_001357_070 Hb_110559_010 Hb_110559_010 Hb_000240_060--Hb_110559_010 Hb_062562_010 Hb_062562_010 Hb_000240_060--Hb_062562_010 Hb_000521_010 Hb_000521_010 Hb_000240_060--Hb_000521_010 Hb_001198_050--Hb_002890_250 Hb_000300_330 Hb_000300_330 Hb_001198_050--Hb_000300_330 Hb_000684_370 Hb_000684_370 Hb_001198_050--Hb_000684_370 Hb_118419_030 Hb_118419_030 Hb_001198_050--Hb_118419_030 Hb_000733_020 Hb_000733_020 Hb_001198_050--Hb_000733_020 Hb_019153_040 Hb_019153_040 Hb_001198_050--Hb_019153_040 Hb_002890_250--Hb_000988_040 Hb_002890_250--Hb_000638_020 Hb_008014_070 Hb_008014_070 Hb_002890_250--Hb_008014_070 Hb_002890_250--Hb_000684_370 Hb_004907_130 Hb_004907_130 Hb_002890_250--Hb_004907_130 Hb_003918_040--Hb_005183_160 Hb_004304_050 Hb_004304_050 Hb_003918_040--Hb_004304_050 Hb_008880_010 Hb_008880_010 Hb_003918_040--Hb_008880_010 Hb_061390_010 Hb_061390_010 Hb_003918_040--Hb_061390_010 Hb_115350_010 Hb_115350_010 Hb_003918_040--Hb_115350_010 Hb_002779_020 Hb_002779_020 Hb_003918_040--Hb_002779_020 Hb_005183_160--Hb_004304_050 Hb_005183_160--Hb_008880_010 Hb_005183_160--Hb_061390_010 Hb_005183_160--Hb_115350_010 Hb_005183_160--Hb_002779_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0927596 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0868567 0 0.0633556 0 0

CAGE analysis