Hb_002890_270

Information

Type -
Description -
Location Contig2890: 329040-329258
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016746
description vinorine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_270 0.0 - - -
2 Hb_002820_140 0.2072533461 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
3 Hb_015974_010 0.2254583426 - - endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]
4 Hb_005653_120 0.2317886563 - - PREDICTED: fatty acyl-CoA reductase 3-like isoform X2 [Prunus mume]
5 Hb_000638_020 0.243070087 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
6 Hb_001198_030 0.2533153737 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
7 Hb_002099_050 0.255901994 - - conserved hypothetical protein [Ricinus communis]
8 Hb_030982_040 0.2696858752 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
9 Hb_002918_300 0.2771718051 - - -
10 Hb_001349_010 0.2783327852 - - -
11 Hb_004297_040 0.2793065003 - - acyl CoA reductase [Hevea brasiliensis]
12 Hb_005615_070 0.2793804291 - - Rab7 [Hevea brasiliensis]
13 Hb_001892_120 0.2808347903 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
14 Hb_081245_010 0.2809420627 - - Caffeic acid 3-O-methyltransferase [Morus notabilis]
15 Hb_010166_020 0.2845645246 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
16 Hb_012779_110 0.2875472974 - - PREDICTED: uncharacterized protein LOC105650717 [Jatropha curcas]
17 Hb_002492_020 0.2893091768 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
18 Hb_001798_010 0.290490884 transcription factor TF Family: NAC NAC domain containing protein 2-like protein, partial [Helianthus annuus]
19 Hb_001221_380 0.2928421316 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
20 Hb_000178_110 0.2956763447 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002890_270 Hb_002890_270 Hb_002820_140 Hb_002820_140 Hb_002890_270--Hb_002820_140 Hb_015974_010 Hb_015974_010 Hb_002890_270--Hb_015974_010 Hb_005653_120 Hb_005653_120 Hb_002890_270--Hb_005653_120 Hb_000638_020 Hb_000638_020 Hb_002890_270--Hb_000638_020 Hb_001198_030 Hb_001198_030 Hb_002890_270--Hb_001198_030 Hb_002099_050 Hb_002099_050 Hb_002890_270--Hb_002099_050 Hb_001892_120 Hb_001892_120 Hb_002820_140--Hb_001892_120 Hb_005615_070 Hb_005615_070 Hb_002820_140--Hb_005615_070 Hb_004297_040 Hb_004297_040 Hb_002820_140--Hb_004297_040 Hb_002260_090 Hb_002260_090 Hb_002820_140--Hb_002260_090 Hb_002820_140--Hb_015974_010 Hb_005908_040 Hb_005908_040 Hb_002820_140--Hb_005908_040 Hb_030982_040 Hb_030982_040 Hb_015974_010--Hb_030982_040 Hb_015974_010--Hb_005653_120 Hb_005867_040 Hb_005867_040 Hb_015974_010--Hb_005867_040 Hb_004453_140 Hb_004453_140 Hb_015974_010--Hb_004453_140 Hb_113951_010 Hb_113951_010 Hb_015974_010--Hb_113951_010 Hb_015974_010--Hb_000638_020 Hb_005653_120--Hb_030982_040 Hb_001946_320 Hb_001946_320 Hb_005653_120--Hb_001946_320 Hb_002307_090 Hb_002307_090 Hb_005653_120--Hb_002307_090 Hb_005653_120--Hb_005615_070 Hb_000809_050 Hb_000809_050 Hb_005653_120--Hb_000809_050 Hb_000193_240 Hb_000193_240 Hb_000638_020--Hb_000193_240 Hb_000380_020 Hb_000380_020 Hb_000638_020--Hb_000380_020 Hb_000638_020--Hb_004453_140 Hb_163950_010 Hb_163950_010 Hb_000638_020--Hb_163950_010 Hb_000832_230 Hb_000832_230 Hb_000638_020--Hb_000832_230 Hb_001349_010 Hb_001349_010 Hb_001198_030--Hb_001349_010 Hb_001198_030--Hb_004297_040 Hb_001266_050 Hb_001266_050 Hb_001198_030--Hb_001266_050 Hb_010166_020 Hb_010166_020 Hb_001198_030--Hb_010166_020 Hb_000143_050 Hb_000143_050 Hb_001198_030--Hb_000143_050 Hb_001621_180 Hb_001621_180 Hb_001198_030--Hb_001621_180 Hb_011671_400 Hb_011671_400 Hb_002099_050--Hb_011671_400 Hb_008864_060 Hb_008864_060 Hb_002099_050--Hb_008864_060 Hb_000250_010 Hb_000250_010 Hb_002099_050--Hb_000250_010 Hb_002099_050--Hb_001892_120 Hb_002099_050--Hb_002260_090 Hb_003052_040 Hb_003052_040 Hb_002099_050--Hb_003052_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.498459 0 0 0 1.01939 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.997055 1.59854 0.922402 0 0

CAGE analysis