Hb_002820_140

Information

Type -
Description -
Location Contig2820: 104751-119289
Sequence    

Annotation

kegg
ID rcu:RCOM_0716680
description hypothetical protein
nr
ID XP_012078200.1
description PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29548: 109748-110128 , PASA_asmbl_29550: 111219-117811 , PASA_asmbl_29551: 111478-111618
cDNA
(Sanger)
(ID:Location)		 011_E04.ab1: 111210-117811

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002820_140 0.0 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
2 Hb_001892_120 0.170547731 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
3 Hb_005615_070 0.1751044426 - - Rab7 [Hevea brasiliensis]
4 Hb_004297_040 0.1791511174 - - acyl CoA reductase [Hevea brasiliensis]
5 Hb_002260_090 0.1807667619 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
6 Hb_015974_010 0.1825427201 - - endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]
7 Hb_005908_040 0.1850557332 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
8 Hb_002492_020 0.1884361298 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
9 Hb_003060_030 0.1909862626 - - conserved hypothetical protein 16 [Hevea brasiliensis]
10 Hb_000544_110 0.1915849172 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
11 Hb_001279_130 0.1924507382 - - hypothetical protein L484_017676 [Morus notabilis]
12 Hb_000853_360 0.1950678595 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
13 Hb_005841_040 0.1955686073 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
14 Hb_010594_030 0.1986931052 - - -
15 Hb_001102_250 0.2009606003 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
16 Hb_002099_050 0.2020576935 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000638_020 0.2022044794 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
18 Hb_072912_020 0.2022708792 - - abhydrolase domain containing, putative [Ricinus communis]
19 Hb_011671_400 0.2032373194 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
20 Hb_001198_030 0.2042174609 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]

Gene co-expression network

sample Hb_002820_140 Hb_002820_140 Hb_001892_120 Hb_001892_120 Hb_002820_140--Hb_001892_120 Hb_005615_070 Hb_005615_070 Hb_002820_140--Hb_005615_070 Hb_004297_040 Hb_004297_040 Hb_002820_140--Hb_004297_040 Hb_002260_090 Hb_002260_090 Hb_002820_140--Hb_002260_090 Hb_015974_010 Hb_015974_010 Hb_002820_140--Hb_015974_010 Hb_005908_040 Hb_005908_040 Hb_002820_140--Hb_005908_040 Hb_002099_050 Hb_002099_050 Hb_001892_120--Hb_002099_050 Hb_001279_130 Hb_001279_130 Hb_001892_120--Hb_001279_130 Hb_000699_120 Hb_000699_120 Hb_001892_120--Hb_000699_120 Hb_000638_020 Hb_000638_020 Hb_001892_120--Hb_000638_020 Hb_001892_120--Hb_002260_090 Hb_001621_180 Hb_001621_180 Hb_005615_070--Hb_001621_180 Hb_000143_050 Hb_000143_050 Hb_005615_070--Hb_000143_050 Hb_005615_070--Hb_004297_040 Hb_000032_260 Hb_000032_260 Hb_005615_070--Hb_000032_260 Hb_002291_030 Hb_002291_030 Hb_005615_070--Hb_002291_030 Hb_000085_300 Hb_000085_300 Hb_005615_070--Hb_000085_300 Hb_000367_280 Hb_000367_280 Hb_004297_040--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_004297_040--Hb_001213_120 Hb_078633_010 Hb_078633_010 Hb_004297_040--Hb_078633_010 Hb_005137_020 Hb_005137_020 Hb_004297_040--Hb_005137_020 Hb_001102_250 Hb_001102_250 Hb_004297_040--Hb_001102_250 Hb_001268_080 Hb_001268_080 Hb_004297_040--Hb_001268_080 Hb_014497_110 Hb_014497_110 Hb_002260_090--Hb_014497_110 Hb_002260_090--Hb_001213_120 Hb_011671_400 Hb_011671_400 Hb_002260_090--Hb_011671_400 Hb_003052_040 Hb_003052_040 Hb_002260_090--Hb_003052_040 Hb_012366_020 Hb_012366_020 Hb_002260_090--Hb_012366_020 Hb_002260_090--Hb_005908_040 Hb_030982_040 Hb_030982_040 Hb_015974_010--Hb_030982_040 Hb_005653_120 Hb_005653_120 Hb_015974_010--Hb_005653_120 Hb_005867_040 Hb_005867_040 Hb_015974_010--Hb_005867_040 Hb_004453_140 Hb_004453_140 Hb_015974_010--Hb_004453_140 Hb_113951_010 Hb_113951_010 Hb_015974_010--Hb_113951_010 Hb_015974_010--Hb_000638_020 Hb_005908_040--Hb_005137_020 Hb_010172_100 Hb_010172_100 Hb_005908_040--Hb_010172_100 Hb_005908_040--Hb_001102_250 Hb_005908_040--Hb_004297_040 Hb_003095_070 Hb_003095_070 Hb_005908_040--Hb_003095_070 Hb_000544_110 Hb_000544_110 Hb_005908_040--Hb_000544_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.286587 0 0 0 0.183783 0.0338229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.352339 0.761636 0.367975 0.0565018 0

CAGE analysis