Hb_003209_060

Information

Type -
Description -
Location Contig3209: 56161-58349
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0008152
description heparanase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33927: 44103-72415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003209_060 0.0 - - -
2 Hb_003159_090 0.155253762 - - -
3 Hb_014497_110 0.2106920415 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
4 Hb_000380_020 0.2158058662 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
5 Hb_009974_030 0.2224208743 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
6 Hb_012366_020 0.2293894021 - - unnamed protein product [Vitis vinifera]
7 Hb_003906_100 0.2308459313 - - hypothetical protein JCGZ_26174 [Jatropha curcas]
8 Hb_148850_010 0.2349705276 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
9 Hb_009812_020 0.2382065238 - - -
10 Hb_000934_030 0.2434952606 - - -
11 Hb_000261_450 0.2450950045 - - Pectinesterase U1 precursor, putative [Ricinus communis]
12 Hb_000165_010 0.2452360819 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
13 Hb_001369_450 0.2473705865 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
14 Hb_002260_090 0.248255723 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
15 Hb_002478_020 0.2493748176 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
16 Hb_001279_130 0.250434976 - - hypothetical protein L484_017676 [Morus notabilis]
17 Hb_033772_050 0.2528804632 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
18 Hb_009486_190 0.253638883 - - ATP binding protein, putative [Ricinus communis]
19 Hb_163950_010 0.2555572396 - - -
20 Hb_000749_250 0.257455577 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]

Gene co-expression network

sample Hb_003209_060 Hb_003209_060 Hb_003159_090 Hb_003159_090 Hb_003209_060--Hb_003159_090 Hb_014497_110 Hb_014497_110 Hb_003209_060--Hb_014497_110 Hb_000380_020 Hb_000380_020 Hb_003209_060--Hb_000380_020 Hb_009974_030 Hb_009974_030 Hb_003209_060--Hb_009974_030 Hb_012366_020 Hb_012366_020 Hb_003209_060--Hb_012366_020 Hb_003906_100 Hb_003906_100 Hb_003209_060--Hb_003906_100 Hb_000261_450 Hb_000261_450 Hb_003159_090--Hb_000261_450 Hb_003159_090--Hb_000380_020 Hb_000003_270 Hb_000003_270 Hb_003159_090--Hb_000003_270 Hb_000731_250 Hb_000731_250 Hb_003159_090--Hb_000731_250 Hb_007576_030 Hb_007576_030 Hb_003159_090--Hb_007576_030 Hb_002260_090 Hb_002260_090 Hb_014497_110--Hb_002260_090 Hb_001213_120 Hb_001213_120 Hb_014497_110--Hb_001213_120 Hb_014497_110--Hb_012366_020 Hb_001012_040 Hb_001012_040 Hb_014497_110--Hb_001012_040 Hb_002983_030 Hb_002983_030 Hb_014497_110--Hb_002983_030 Hb_003052_040 Hb_003052_040 Hb_014497_110--Hb_003052_040 Hb_006594_020 Hb_006594_020 Hb_000380_020--Hb_006594_020 Hb_001279_130 Hb_001279_130 Hb_000380_020--Hb_001279_130 Hb_000749_250 Hb_000749_250 Hb_000380_020--Hb_000749_250 Hb_005614_050 Hb_005614_050 Hb_000380_020--Hb_005614_050 Hb_001143_090 Hb_001143_090 Hb_000380_020--Hb_001143_090 Hb_000638_020 Hb_000638_020 Hb_000380_020--Hb_000638_020 Hb_009974_030--Hb_014497_110 Hb_000120_580 Hb_000120_580 Hb_009974_030--Hb_000120_580 Hb_001052_030 Hb_001052_030 Hb_009974_030--Hb_001052_030 Hb_009974_030--Hb_000261_450 Hb_016604_020 Hb_016604_020 Hb_009974_030--Hb_016604_020 Hb_003060_030 Hb_003060_030 Hb_009974_030--Hb_003060_030 Hb_012366_020--Hb_002260_090 Hb_030765_020 Hb_030765_020 Hb_012366_020--Hb_030765_020 Hb_000003_840 Hb_000003_840 Hb_012366_020--Hb_000003_840 Hb_002936_050 Hb_002936_050 Hb_012366_020--Hb_002936_050 Hb_000836_500 Hb_000836_500 Hb_012366_020--Hb_000836_500 Hb_000178_110 Hb_000178_110 Hb_012366_020--Hb_000178_110 Hb_002909_060 Hb_002909_060 Hb_003906_100--Hb_002909_060 Hb_009486_190 Hb_009486_190 Hb_003906_100--Hb_009486_190 Hb_002540_030 Hb_002540_030 Hb_003906_100--Hb_002540_030 Hb_000261_440 Hb_000261_440 Hb_003906_100--Hb_000261_440 Hb_004607_150 Hb_004607_150 Hb_003906_100--Hb_004607_150 Hb_003906_100--Hb_000003_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112543 0.139666 0 0 0.105653 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.260311 0.409246 0.362968 0.055631 0

CAGE analysis